HHsearch alignment for GI: 254780623 and conserved domain: cd05033
>cd05033 PTKc_EphR Catalytic Domain of Ephrin Receptor Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment
Probab=98.84 E-value=2.9e-08 Score=83.19 Aligned_cols=146 Identities=15% Similarity=0.241 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHHHHHHEECC-CCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 8676667788886555502128-887236876403104688777788999875321146854334691799999998878
Q gi|254780623|r 122 EFDDPIAAASIAQVHPAVVHDI-NGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTK 200 (517)
Q Consensus 122 ~fdePlasASiaQVh~A~l~d~-~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~ 200 (517)
T Consensus 7 ~~~~~IG~G~fg~Vy~~~~~~~~~~~~~vAvK~l~~~~~~---------------------------------------~ 47 (266)
T cd05033 7 TIEKVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSD---------------------------------------K 47 (266)
T ss_pred EEEEEEECCCCCEEEEEEEECCCCEEEEEEEEEECCCCCH---------------------------------------H
T ss_conf 9988993076839999999279965079999998865797---------------------------------------8
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCH--HCCCCEEEEECCCCCCCCHHHHHHHHCCCHHH---HHHHHHHHHH
Q ss_conf 886559999889872024467766430000102--21783353002478632426773320022568---9999999999
Q gi|254780623|r 201 MEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWN--RTERDVITMEWIDGVKISDTEKLRACGHDLER---LSVTLVQSFL 275 (517)
Q Consensus 201 ~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~--~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~---la~~l~~~~~ 275 (517)
T Consensus 48 ~~~~f~~E~~~l~~l~H-----pnI--v~l~g~~~~~~~~~lV~Ey~~~GsL~~~L~~~~~~l~~~~~~~i~~~ia~g-l 119 (266)
T cd05033 48 QRLDFLTEASIMGQFDH-----PNI--IRLEGVVTKSRPVMIITEYMENGSLDKFLRENDGKFTVGQLVGMLRGIASG-M 119 (266)
T ss_pred HHHHHHHHHHHHHHCCC-----CCE--EEEEEEEEECCEEEEEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHH-H
T ss_conf 99999999999984899-----788--119999968999999998589996999997278999999999999999999-9
Q ss_pred HHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf 989744866178786228980289535743403121698
Q gi|254780623|r 276 LHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517)
Q Consensus 276 ~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517)
T Consensus 120 ~yLH~~~ivHrDlK~~NILl~~~~~~Kl~DFGls~~~~~ 158 (266)
T cd05033 120 KYLSEMNYVHRDLAARNILVNSNLVCKVSDFGLSRRLED 158 (266)
T ss_pred HHHHHCCEECCCCCCCEEEECCCCCEEEEECCCCEECCC
T ss_conf 988558887055672137787999889965677757778