HHsearch alignment for GI: 254780623 and conserved domain: cd05036

>cd05036 PTKc_ALK_LTK Catalytic Domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase. Protein Tyrosine Kinase (PTK) family; Anaplastic lymphoma kinase (ALK) and Leukocyte tyrosine (tyr) kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well
Probab=98.46  E-value=7.3e-07  Score=72.34  Aligned_cols=147  Identities=15%  Similarity=0.189  Sum_probs=87.0

Q ss_pred             HHHH--HHHHHHHHHHHHHHHEECCC---CCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
Q ss_conf             9867--66677888865555021288---872368764031046887777889998753211468543346917999999
Q gi|254780623|r  121 CEFD--DPIAAASIAQVHPAVVHDIN---GYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRAL  195 (517)
Q Consensus       121 ~~fd--ePlasASiaQVh~A~l~d~~---~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~  195 (517)
T Consensus         6 ~~~~i~~~iG~G~FG~Vy~g~~~~~~~~~~~~~VavK~~~~~~~------------------------------------   49 (277)
T cd05036           6 DSITLLRALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESCS------------------------------------   49 (277)
T ss_pred             HHEEEEEEEEECCCCEEEEEEEECCCCCCEEEEEEEEEECCCCC------------------------------------
T ss_conf             99498009830788599999996888884038999999676679------------------------------------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHH------CCCHH---H
Q ss_conf             9887888655999988987202446776643-000010221783353002478632426773320------02256---8
Q gi|254780623|r  196 EQVTKMEMDLRLEAAAFSEMAENTVKDQGFR-VPKIDWNRTERDVITMEWIDGVKISDTEKLRAC------GHDLE---R  265 (517)
Q Consensus       196 ~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~-vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~------~~d~~---~  265 (517)
T Consensus        50 ---~~~~~~f~~E~~il~~l~H-----pnIv~~~g~~~-~~~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~l~~~~~~~  120 (277)
T cd05036          50 ---EQDESDFLMEALIMSKFNH-----QNIVRLIGVSF-ERLPRFILLELMAGGDLKSFLRENRPRPERPSSLTMKDLLF  120 (277)
T ss_pred             ---HHHHHHHHHHHHHHHHCCC-----CCEEEEEEEEE-ECCEEEEEEEECCCCCHHHHHHHCCCCCCCCCCCCHHHHHH
T ss_conf             ---8899999999999984899-----89733999998-89978999995689958999985188867665568999999


Q ss_pred             HHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCC---EEEEECCHHEECC
Q ss_conf             99999999999897448661787862289802895---3574340312169
Q gi|254780623|r  266 LSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGY---IVAVDMGITGRLS  313 (517)
Q Consensus       266 la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~---i~~lDfG~vg~l~  313 (517)
T Consensus       121 i~~~ia~g-l~yLH~~~ivHrDlKp~NiLl~~~g~~~~~Ki~DFGls~~~~  170 (277)
T cd05036         121 CARDVAKG-CKYLEENHFIHRDIAARNCLLTCKGPGRVAKIADFGMARDIY  170 (277)
T ss_pred             HHHHHHHH-HHHHHHCCCCCCCCCHHHEEEECCCCCCEEEEEECCCCCCCC
T ss_conf             99999999-999987991568775562899068998558999767741156