HHsearch alignment for GI: 254780623 and conserved domain: cd05036
>cd05036 PTKc_ALK_LTK Catalytic Domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase. Protein Tyrosine Kinase (PTK) family; Anaplastic lymphoma kinase (ALK) and Leukocyte tyrosine (tyr) kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well
Probab=98.46 E-value=7.3e-07 Score=72.34 Aligned_cols=147 Identities=15% Similarity=0.189 Sum_probs=87.0
Q ss_pred HHHH--HHHHHHHHHHHHHHHEECCC---CCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
Q ss_conf 9867--66677888865555021288---872368764031046887777889998753211468543346917999999
Q gi|254780623|r 121 CEFD--DPIAAASIAQVHPAVVHDIN---GYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRAL 195 (517)
Q Consensus 121 ~~fd--ePlasASiaQVh~A~l~d~~---~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~ 195 (517)
T Consensus 6 ~~~~i~~~iG~G~FG~Vy~g~~~~~~~~~~~~~VavK~~~~~~~------------------------------------ 49 (277)
T cd05036 6 DSITLLRALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESCS------------------------------------ 49 (277)
T ss_pred HHEEEEEEEEECCCCEEEEEEEECCCCCCEEEEEEEEEECCCCC------------------------------------
T ss_conf 99498009830788599999996888884038999999676679------------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHH------CCCHH---H
Q ss_conf 9887888655999988987202446776643-000010221783353002478632426773320------02256---8
Q gi|254780623|r 196 EQVTKMEMDLRLEAAAFSEMAENTVKDQGFR-VPKIDWNRTERDVITMEWIDGVKISDTEKLRAC------GHDLE---R 265 (517)
Q Consensus 196 ~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~-vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~------~~d~~---~ 265 (517)
T Consensus 50 ---~~~~~~f~~E~~il~~l~H-----pnIv~~~g~~~-~~~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~l~~~~~~~ 120 (277)
T cd05036 50 ---EQDESDFLMEALIMSKFNH-----QNIVRLIGVSF-ERLPRFILLELMAGGDLKSFLRENRPRPERPSSLTMKDLLF 120 (277)
T ss_pred ---HHHHHHHHHHHHHHHHCCC-----CCEEEEEEEEE-ECCEEEEEEEECCCCCHHHHHHHCCCCCCCCCCCCHHHHHH
T ss_conf ---8899999999999984899-----89733999998-89978999995689958999985188867665568999999
Q ss_pred HHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCC---EEEEECCHHEECC
Q ss_conf 99999999999897448661787862289802895---3574340312169
Q gi|254780623|r 266 LSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGY---IVAVDMGITGRLS 313 (517)
Q Consensus 266 la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~---i~~lDfG~vg~l~ 313 (517)
T Consensus 121 i~~~ia~g-l~yLH~~~ivHrDlKp~NiLl~~~g~~~~~Ki~DFGls~~~~ 170 (277)
T cd05036 121 CARDVAKG-CKYLEENHFIHRDIAARNCLLTCKGPGRVAKIADFGMARDIY 170 (277)
T ss_pred HHHHHHHH-HHHHHHCCCCCCCCCHHHEEEECCCCCCEEEEEECCCCCCCC
T ss_conf 99999999-999987991568775562899068998558999767741156