HHsearch alignment for GI: 254780623 and conserved domain: cd05041
>cd05041 PTKc_Fes_like Catalytic Domain of Fes-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k
Probab=98.90 E-value=5.8e-09 Score=88.64 Aligned_cols=137 Identities=17% Similarity=0.191 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517)
Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517)
T Consensus 1 e~lG~G~fg~Vy~~~~~~---~~~vAvK~~~~~~~~~~~---------------------------------------~~ 38 (251)
T cd05041 1 EKIGKGNFGDVYKGVLKG---KTEVAVKTCRSTLPPDLK---------------------------------------RK 38 (251)
T ss_pred CCCCCCCCCEEEEEEECC---CCEEEEEEECHHCCHHHH---------------------------------------HH
T ss_conf 977589884899999999---989999998620497899---------------------------------------99
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHH--CCCCEEEEECCCCCCCCHHHHHHHHCCCHHH---HHHHHHHHHHHHHH
Q ss_conf 599998898720244677664300001022--1783353002478632426773320022568---99999999999897
Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNR--TERDVITMEWIDGVKISDTEKLRACGHDLER---LSVTLVQSFLLHTL 279 (517)
Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~--st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~---la~~l~~~~~~qi~ 279 (517)
T Consensus 39 ~~~E~~il~~l~H-----pnIv--~~~g~~~~~~~~~lvmEy~~~G~L~~~l~~~~~~~~~~~~~~i~~~ia~g-l~yLH 110 (251)
T cd05041 39 FLQEAEILKQYDH-----PNIV--KLIGVCVQKQPIYIVMELVPGGSLLTFLRKKKNRLTVKKLLQMSLDAAAG-MEYLE 110 (251)
T ss_pred HHHHHHHHHHCCC-----CCEE--EEEEEEEECCEEEEEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHH-HHHHH
T ss_conf 9999999985899-----9888--89789957998999998479996899997357999999999999999999-99883
Q ss_pred HCCEECCCCCCCEEEEECCCCEEEEECCHHEE
Q ss_conf 44866178786228980289535743403121
Q gi|254780623|r 280 RDGFFHADLHPGNLFVDSKGYIVAVDMGITGR 311 (517)
Q Consensus 280 ~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~ 311 (517)
T Consensus 111 ~~~ivHrDlKp~NiLl~~~~~~Kl~DFGla~~ 142 (251)
T cd05041 111 SKNCIHRDLAARNCLVGENNVLKISDFGMSRE 142 (251)
T ss_pred HCCCCCCCCCHHHEEECCCCCEEEEECCCCCC
T ss_conf 28952786154008988999189816588604