HHsearch alignment for GI: 254780623 and conserved domain: cd05042
>cd05042 PTKc_Aatyk Catalytic Domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases. Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina
Probab=98.74 E-value=5.8e-08 Score=80.85 Aligned_cols=140 Identities=14% Similarity=0.141 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517)
Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517)
T Consensus 1 e~iG~G~fG~Vy~g~~~~~~~~~~vavK~l~~~~~~---------------------------------------~~~~~ 41 (269)
T cd05042 1 DEIGNGWFGKVLLGEAHRGMSKARVVVKELRASATP---------------------------------------DEQLL 41 (269)
T ss_pred CCCCCCCCCEEEEEEECCCCEEEEEEEEEECCCCCH---------------------------------------HHHHH
T ss_conf 988678683899999807985289999997876897---------------------------------------99999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHH----CCCH---HHHHHHHHH--HHH
Q ss_conf 5999988987202446776643000010221783353002478632426773320----0225---689999999--999
Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRAC----GHDL---ERLSVTLVQ--SFL 275 (517)
Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~----~~d~---~~la~~l~~--~~~ 275 (517)
T Consensus 42 f~~Ei~~l~~l~HpN----Iv~~~g~~~-~~~~~~lv~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~ia~~ia~gl~yL 116 (269)
T cd05042 42 FLQEVQPYRELNHPN----VLQCLGQCI-ESIPYLLVLEFCPLGDLKNYLRSNRGMVAQMAQKDVLQRMACEVASGLLWL 116 (269)
T ss_pred HHHHHHHHHHCCCCC----CCEEEEEEE-ECCEEEEEEEECCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 999999998689989----860999998-899899999906998299998855555444556999999999999999999
Q ss_pred HHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEE
Q ss_conf 989744866178786228980289535743403121
Q gi|254780623|r 276 LHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGR 311 (517)
Q Consensus 276 ~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~ 311 (517)
T Consensus 117 H---~~~ivHrDlK~~NiLl~~~~~~Ki~DFGla~~ 149 (269)
T cd05042 117 H---QADFIHSDLALRNCQLTADLSVKIGDYGLALE 149 (269)
T ss_pred H---HCCEEECCCCCCEEEECCCCCEEEEECCCCCC
T ss_conf 7---58954267654017888999299986757730