HHsearch alignment for GI: 254780623 and conserved domain: cd05043

>cd05043 PTK_Ryk Pseudokinase Domain of the Receptor related to tyrosine kinase. Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It ac
Probab=98.46  E-value=4.9e-06  Score=65.98  Aligned_cols=147  Identities=11%  Similarity=0.138  Sum_probs=87.8

Q ss_pred             HHHHHHHHHHHHHHHHHEECCCC--CCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             67666778888655550212888--7236876403104688777788999875321146854334691799999998878
Q gi|254780623|r  123 FDDPIAAASIAQVHPAVVHDING--YRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTK  200 (517)
Q Consensus       123 fdePlasASiaQVh~A~l~d~~~--g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~  200 (517)
T Consensus        10 l~~~iG~G~FG~Vy~g~~~~~~~~~~~~vavK~~~~~~~~~---------------------------------------   50 (280)
T cd05043          10 LSDLLQEGTFGRIFYGILIDEKPGKEEEVFVKTVKDHASEI---------------------------------------   50 (280)
T ss_pred             EEEEEEECCCCEEEEEEEECCCCCCEEEEEEEEECCCCCHH---------------------------------------
T ss_conf             89999607897999999948986402799999946768989---------------------------------------


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCC-CHHCCCHHCCCCEEEEECCCCCCCCHHHHHH-------HHCCCHHH---HHHH
Q ss_conf             88655999988987202446776643-0000102217833530024786324267733-------20022568---9999
Q gi|254780623|r  201 MEMDLRLEAAAFSEMAENTVKDQGFR-VPKIDWNRTERDVITMEWIDGVKISDTEKLR-------ACGHDLER---LSVT  269 (517)
Q Consensus       201 ~ElD~~~Ea~n~~~~~~~~~~~~~v~-vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~-------~~~~d~~~---la~~  269 (517)
T Consensus        51 ~~~~~~~E~~~l~~l~H-----pNIv~~~g~~~~~~~~~~iv~ey~~~G~L~~~l~~~~~~~~~~~~~l~~~~~~~~~~q  125 (280)
T cd05043          51 QVTLLLQESCLLYGLSH-----QNILPILHVCIEDGEPPFVLYPYMNWGNLKLFLQQCRLGEANNPQALSTQQLVHMAIQ  125 (280)
T ss_pred             HHHHHHHHHHHHHHCCC-----CCCCCEEEEEEECCCEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             99999999999985899-----8988388999988970499999279991999987334565456777899999999999


Q ss_pred             HHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             999999989744866178786228980289535743403121698
Q gi|254780623|r  270 LVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       270 l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
T Consensus       126 ia~g-l~yLH~~~ivHRDLK~~NiLl~~~~~vKi~DFGla~~~~~  169 (280)
T cd05043         126 IACG-MSYLHKRGVIHKDIAARNCVIDEELQVKITDNALSRDLFP  169 (280)
T ss_pred             HHHH-HHHHHHCCEECCCCCCCCEEECCCCCEEEEECCCCEECCC
T ss_conf             9999-9999759935451250316998999789930546644467