HHsearch alignment for GI: 254780623 and conserved domain: cd05053
>cd05053 PTKc_FGFR Catalytic Domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,
Probab=98.56 E-value=3e-07 Score=75.35 Aligned_cols=154 Identities=16% Similarity=0.186 Sum_probs=90.1
Q ss_pred CHHHHHHHHH--HHHHHHHHHHHHHHHEEC----CCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH
Q ss_conf 8999999867--666778888655550212----8887236876403104688777788999875321146854334691
Q gi|254780623|r 115 PIEELYCEFD--DPIAAASIAQVHPAVVHD----INGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCF 188 (517)
Q Consensus 115 ~~~~~F~~fd--ePlasASiaQVh~A~l~d----~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~ 188 (517)
T Consensus 6 ~~~i~~~~~~l~~~LG~G~fG~Vyk~~~~~~~~~~~~~~~vAvK~l~~~~~~---~~~---------------------- 60 (294)
T cd05053 6 EWELPRDRLTLGKPLGEGAFGQVVKAEAVGLPNRQNEETTVAVKMLKEDATE---KDL---------------------- 60 (294)
T ss_pred CCCCCHHHEEECCEEECCCCCEEEEEEECCCCCCCCCCEEEEEEEECCCCCH---HHH----------------------
T ss_conf 6741489928726893077829999998477775778679999998877797---999----------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHH--CCCCEEEEECCCCCCCCHHHHHHH--------
Q ss_conf 7999999988788865599998898720244677664300001022--178335300247863242677332--------
Q gi|254780623|r 189 SAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNR--TERDVITMEWIDGVKISDTEKLRA-------- 258 (517)
Q Consensus 189 ~~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~--st~~VLvmE~i~G~~i~d~~~l~~-------- 258 (517)
T Consensus 61 --------------~~~~~E~~~l~~l~~----HpnI-v-~~~g~~~~~~~~~iv~Ey~~~GsL~~~l~~~~~~~~~~~~ 120 (294)
T cd05053 61 --------------SDLVSEMEVMKMIGK----HKNI-I-NLLGCCTQGGPLYVVVEYAAHGNLRDFLRARRPPGEYASS 120 (294)
T ss_pred --------------HHHHHHHHHHHHHCC----CCCE-E-EEEEEEEECCEEEEEEECCCCCCHHHHHHHCCCCCCCCCC
T ss_conf --------------999999999987348----9868-8-7878980599889999817999499999861875200122
Q ss_pred -------HCCCHH---HHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf -------002256---89999999999989744866178786228980289535743403121698
Q gi|254780623|r 259 -------CGHDLE---RLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517)
Q Consensus 259 -------~~~d~~---~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517)
T Consensus 121 ~~~~~~~~~l~~~~~~~~~~qia~g-l~yLH~~~IvHRDlKp~NILl~~~~~~Kl~DFGls~~~~~ 185 (294)
T cd05053 121 DDPRPPEETLTQKDLVSFAYQVARG-MEYLASKKCIHRDLAARNVLVTEGYVMKIADFGLARDIHD 185 (294)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHH-HHHHHHCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCCC
T ss_conf 2233433577999999999999999-9999848996776770207888999499975787536788