HHsearch alignment for GI: 254780623 and conserved domain: cd05065

>cd05065 PTKc_EphR_B Catalytic Domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors. Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr
Probab=98.85  E-value=1.7e-08  Score=85.01  Aligned_cols=147  Identities=14%  Similarity=0.165  Sum_probs=94.7

Q ss_pred             HHHH--HHHHHHHHHHHHHHHEECC-CCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             9867--6667788886555502128-887236876403104688777788999875321146854334691799999998
Q gi|254780623|r  121 CEFD--DPIAAASIAQVHPAVVHDI-NGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQ  197 (517)
Q Consensus       121 ~~fd--ePlasASiaQVh~A~l~d~-~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~  197 (517)
T Consensus         4 ~~~~l~~~iG~G~fG~Vy~g~~~~~g~~~~~VAvK~l~~~~~~~------------------------------------   47 (269)
T cd05065           4 SCVKIEEVIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGYTEK------------------------------------   47 (269)
T ss_pred             HHCEEEEEEECCCCCEEEEEEEECCCCEEEEEEEEEECCCCCHH------------------------------------
T ss_conf             99298889921778399999993799650799999988457979------------------------------------


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHC---CCCEEEEECCCCCCCCHHHHHHHHCCCHHH---HHHHHH
Q ss_conf             87888655999988987202446776643000010221---783353002478632426773320022568---999999
Q gi|254780623|r  198 VTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRT---ERDVITMEWIDGVKISDTEKLRACGHDLER---LSVTLV  271 (517)
Q Consensus       198 ~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~s---t~~VLvmE~i~G~~i~d~~~l~~~~~d~~~---la~~l~  271 (517)
T Consensus        48 ---~~~~f~~E~~il~~l~H-----pNI--v~~~g-~~~~~~~~~lv~Ey~~~GsL~~~l~~~~~~~~~~~~~~~~~~ia  116 (269)
T cd05065          48 ---QRRDFLSEASIMGQFDH-----PNI--IHLEG-VVTKSRPVMIITEFMENGALDSFLRQNDGQFTVIQLVGMLRGIA  116 (269)
T ss_pred             ---HHHHHHHHHHHHHHCCC-----CCC--CEEEE-EEEECCEEEEEEEECCCCCHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf             ---99999999999986899-----788--71999-99889988999991899918999973679999999999999999


Q ss_pred             HHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             99999897448661787862289802895357434031216989
Q gi|254780623|r  272 QSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       272 ~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
T Consensus       117 ~-gl~yLH~~~iiHrDlKp~NiLl~~~~~~Kl~DFGla~~~~~~  159 (269)
T cd05065         117 A-GMKYLSEMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDD  159 (269)
T ss_pred             H-HHHHHHHCCEECCCCCCCCEEECCCCCEEEEECCCCEECCCC
T ss_conf             9-999986698741667703066779996998335356776678