HHsearch alignment for GI: 254780623 and conserved domain: cd05068

>cd05068 PTKc_Frk_like Catalytic Domain of Fyn-related kinase-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a
Probab=98.78  E-value=6.2e-08  Score=80.65  Aligned_cols=142  Identities=17%  Similarity=0.218  Sum_probs=90.0

Q ss_pred             HHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             9867--66677888865555021288872368764031046887777889998753211468543346917999999988
Q gi|254780623|r  121 CEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQV  198 (517)
Q Consensus       121 ~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  198 (517)
T Consensus         6 ~~~~~~~~iG~G~fg~Vy~~~~~~---~~~VAvK~~~~~~~---------------------------~-----------   44 (261)
T cd05068           6 TSIQLLRKLGAGQFGEVWEGLWNN---TTPVAVKTLKPGTM---------------------------D-----------   44 (261)
T ss_pred             HHEEEEEEEECCCCEEEEEEEECC---CCEEEEEEECCCCC---------------------------C-----------
T ss_conf             996986798318780999999899---98999999847889---------------------------9-----------


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHC--CCCEEEEECCCCCCCCHHHHHHH-HCCCHHH---HHHHHHH
Q ss_conf             7888655999988987202446776643000010221--78335300247863242677332-0022568---9999999
Q gi|254780623|r  199 TKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRT--ERDVITMEWIDGVKISDTEKLRA-CGHDLER---LSVTLVQ  272 (517)
Q Consensus       199 l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~s--t~~VLvmE~i~G~~i~d~~~l~~-~~~d~~~---la~~l~~  272 (517)
T Consensus        45 ---~~~~~~E~~~l~~l~H-----pn--Iv~~~g~~~~~~~~~iv~E~~~~G~L~~~l~~~~~~~l~~~~~~~i~~qia~  114 (261)
T cd05068          45 ---PKDFLAEAQIMKKLRH-----PK--LIQLYAVCTLEEPIYIVTELMKYGSLLEYLQGGAGRALKLPQLIDMAAQVAS  114 (261)
T ss_pred             ---HHHHHHHHHHHHHCCC-----CC--CCEEEEEEEECCEEEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHH
T ss_conf             ---9999999999986899-----68--9909999998998999999069998999996378888999999999999999


Q ss_pred             HHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             999989744866178786228980289535743403121698
Q gi|254780623|r  273 SFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       273 ~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
T Consensus       115 g-l~yLH~~~iiHrDLKp~NILl~~~~~vKl~DFGls~~~~~  155 (261)
T cd05068         115 G-MAYLEAQNYIHRDLAARNVLVGENNICKVADFGLARVIKE  155 (261)
T ss_pred             H-HHHHHHCCEECCCCCCCEEEECCCCCEEEEECCCCEECCC
T ss_conf             9-9999867972065661558988999689983432124468