HHsearch alignment for GI: 254780623 and conserved domain: cd05068
>cd05068 PTKc_Frk_like Catalytic Domain of Fyn-related kinase-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a
Probab=98.78 E-value=6.2e-08 Score=80.65 Aligned_cols=142 Identities=17% Similarity=0.218 Sum_probs=90.0
Q ss_pred HHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 9867--66677888865555021288872368764031046887777889998753211468543346917999999988
Q gi|254780623|r 121 CEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQV 198 (517)
Q Consensus 121 ~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 198 (517)
T Consensus 6 ~~~~~~~~iG~G~fg~Vy~~~~~~---~~~VAvK~~~~~~~---------------------------~----------- 44 (261)
T cd05068 6 TSIQLLRKLGAGQFGEVWEGLWNN---TTPVAVKTLKPGTM---------------------------D----------- 44 (261)
T ss_pred HHEEEEEEEECCCCEEEEEEEECC---CCEEEEEEECCCCC---------------------------C-----------
T ss_conf 996986798318780999999899---98999999847889---------------------------9-----------
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHC--CCCEEEEECCCCCCCCHHHHHHH-HCCCHHH---HHHHHHH
Q ss_conf 7888655999988987202446776643000010221--78335300247863242677332-0022568---9999999
Q gi|254780623|r 199 TKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRT--ERDVITMEWIDGVKISDTEKLRA-CGHDLER---LSVTLVQ 272 (517)
Q Consensus 199 l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~s--t~~VLvmE~i~G~~i~d~~~l~~-~~~d~~~---la~~l~~ 272 (517)
T Consensus 45 ---~~~~~~E~~~l~~l~H-----pn--Iv~~~g~~~~~~~~~iv~E~~~~G~L~~~l~~~~~~~l~~~~~~~i~~qia~ 114 (261)
T cd05068 45 ---PKDFLAEAQIMKKLRH-----PK--LIQLYAVCTLEEPIYIVTELMKYGSLLEYLQGGAGRALKLPQLIDMAAQVAS 114 (261)
T ss_pred ---HHHHHHHHHHHHHCCC-----CC--CCEEEEEEEECCEEEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHH
T ss_conf ---9999999999986899-----68--9909999998998999999069998999996378888999999999999999
Q ss_pred HHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf 999989744866178786228980289535743403121698
Q gi|254780623|r 273 SFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517)
Q Consensus 273 ~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517)
T Consensus 115 g-l~yLH~~~iiHrDLKp~NILl~~~~~vKl~DFGls~~~~~ 155 (261)
T cd05068 115 G-MAYLEAQNYIHRDLAARNVLVGENNICKVADFGLARVIKE 155 (261)
T ss_pred H-HHHHHHCCEECCCCCCCEEEECCCCCEEEEECCCCEECCC
T ss_conf 9-9999867972065661558988999689983432124468