HHsearch alignment for GI: 254780623 and conserved domain: cd05074
>cd05074 PTKc_Tyro3 Catalytic Domain of the Protein Tyrosine Kinase, Tyro3. Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac
Probab=98.85 E-value=1.4e-08 Score=85.74 Aligned_cols=145 Identities=15% Similarity=0.291 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHHHHEE-CCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 766677888865555021-2888723687640310468877778899987532114685433469179999999887888
Q gi|254780623|r 124 DDPIAAASIAQVHPAVVH-DINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKME 202 (517)
Q Consensus 124 dePlasASiaQVh~A~l~-d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~E 202 (517)
T Consensus 4 ~~~iG~G~fG~Vy~~~~~~~~~~~~~vAvK~l~~~~~~~----------------------------~~~~--------- 46 (273)
T cd05074 4 GRMLGKGEFGSVREAQLKSEDGSFQKVAVKMLKADIFSS----------------------------SDIE--------- 46 (273)
T ss_pred CCEEECCCCEEEEEEEEECCCCCCEEEEEEEECHHHCCH----------------------------HHHH---------
T ss_conf 878965888199999994568877599999988120887----------------------------8999---------
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCHHCC----CHHCCC----CEEEEECCCCCCCCHHHHHHHHC-----CCHHH---H
Q ss_conf 65599998898720244677664300001----022178----33530024786324267733200-----22568---9
Q gi|254780623|r 203 MDLRLEAAAFSEMAENTVKDQGFRVPKID----WNRTER----DVITMEWIDGVKISDTEKLRACG-----HDLER---L 266 (517)
Q Consensus 203 lD~~~Ea~n~~~~~~~~~~~~~v~vP~vy----~~~st~----~VLvmE~i~G~~i~d~~~l~~~~-----~d~~~---l 266 (517)
T Consensus 47 -~~~~E~~~l~~l~H-----pnIv--~l~g~~~~~~~~~~~~~~~~v~e~~~~G~L~~~l~~~~~~~~~~~l~~~~~~~i 118 (273)
T cd05074 47 -EFLREAACMKEFDH-----PNVI--KLIGVSLRSRAKGRLPIPMVILPFMKHGDLHTFLLMSRIGEEPFTLPLQTLVRF 118 (273)
T ss_pred -HHHHHHHHHHHCCC-----CCCC--EEEEEEEECCCCCCCCEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCHHHHHHH
T ss_conf -99999999996799-----9833--189999844666766510899983799888999876103577888899999999
Q ss_pred HHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf 999999999989744866178786228980289535743403121698
Q gi|254780623|r 267 SVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517)
Q Consensus 267 a~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517)
T Consensus 119 ~~qia~g-l~yLH~~~iiHRDlKp~NiLl~~~~~~kl~DFGls~~~~~ 165 (273)
T cd05074 119 MIDIASG-MEYLSSKNFIHRDLAARNCMLNENMTVCVADFGLSKKIYS 165 (273)
T ss_pred HHHHHHH-HHHHHHCCCCCCCCCCCEEEECCCCCEEEEECCCCEECCC
T ss_conf 9999999-9999858936255656558998999789984687627789