HHsearch alignment for GI: 254780623 and conserved domain: cd05074

>cd05074 PTKc_Tyro3 Catalytic Domain of the Protein Tyrosine Kinase, Tyro3. Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac
Probab=98.85  E-value=1.4e-08  Score=85.74  Aligned_cols=145  Identities=15%  Similarity=0.291  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHHHHHHHEE-CCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             766677888865555021-2888723687640310468877778899987532114685433469179999999887888
Q gi|254780623|r  124 DDPIAAASIAQVHPAVVH-DINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKME  202 (517)
Q Consensus       124 dePlasASiaQVh~A~l~-d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~E  202 (517)
T Consensus         4 ~~~iG~G~fG~Vy~~~~~~~~~~~~~vAvK~l~~~~~~~----------------------------~~~~---------   46 (273)
T cd05074           4 GRMLGKGEFGSVREAQLKSEDGSFQKVAVKMLKADIFSS----------------------------SDIE---------   46 (273)
T ss_pred             CCEEECCCCEEEEEEEEECCCCCCEEEEEEEECHHHCCH----------------------------HHHH---------
T ss_conf             878965888199999994568877599999988120887----------------------------8999---------


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCHHCC----CHHCCC----CEEEEECCCCCCCCHHHHHHHHC-----CCHHH---H
Q ss_conf             65599998898720244677664300001----022178----33530024786324267733200-----22568---9
Q gi|254780623|r  203 MDLRLEAAAFSEMAENTVKDQGFRVPKID----WNRTER----DVITMEWIDGVKISDTEKLRACG-----HDLER---L  266 (517)
Q Consensus       203 lD~~~Ea~n~~~~~~~~~~~~~v~vP~vy----~~~st~----~VLvmE~i~G~~i~d~~~l~~~~-----~d~~~---l  266 (517)
T Consensus        47 -~~~~E~~~l~~l~H-----pnIv--~l~g~~~~~~~~~~~~~~~~v~e~~~~G~L~~~l~~~~~~~~~~~l~~~~~~~i  118 (273)
T cd05074          47 -EFLREAACMKEFDH-----PNVI--KLIGVSLRSRAKGRLPIPMVILPFMKHGDLHTFLLMSRIGEEPFTLPLQTLVRF  118 (273)
T ss_pred             -HHHHHHHHHHHCCC-----CCCC--EEEEEEEECCCCCCCCEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCHHHHHHH
T ss_conf             -99999999996799-----9833--189999844666766510899983799888999876103577888899999999


Q ss_pred             HHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             999999999989744866178786228980289535743403121698
Q gi|254780623|r  267 SVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       267 a~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
T Consensus       119 ~~qia~g-l~yLH~~~iiHRDlKp~NiLl~~~~~~kl~DFGls~~~~~  165 (273)
T cd05074         119 MIDIASG-MEYLSSKNFIHRDLAARNCMLNENMTVCVADFGLSKKIYS  165 (273)
T ss_pred             HHHHHHH-HHHHHHCCCCCCCCCCCEEEECCCCCEEEEECCCCEECCC
T ss_conf             9999999-9999858936255656558998999789984687627789