HHsearch alignment for GI: 254780623 and conserved domain: cd05077

>cd05077 PTK_Jak1_rpt1 Pseudokinase (Repeat 1) Domain of the Protein Tyrosine Kinase, Janus kinase 1. Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom
Probab=98.15  E-value=9.1e-06  Score=63.88  Aligned_cols=139  Identities=11%  Similarity=0.164  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCC----------EEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH
Q ss_conf             66677888865555021288872----------36876403104688777788999875321146854334691799999
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYR----------KVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRA  194 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~----------~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e  194 (517)
T Consensus         1 e~lG~G~fG~VykG~~~~~~~~~~~~~~~~~~v~VaiK~~~~~~------------------------------------   44 (262)
T cd05077           1 EHLGRGTRTNIYSGTLNYKSDDDEDGYSYEKEIKVVLKVLDPSH------------------------------------   44 (262)
T ss_pred             CCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEEEECCCCC------------------------------------
T ss_conf             98876899779717970788643334455237899998679755------------------------------------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCC---HHHHHHHH
Q ss_conf             9988788865599998898720244677664-3000010221783353002478632426773320022---56899999
Q gi|254780623|r  195 LEQVTKMEMDLRLEAAAFSEMAENTVKDQGF-RVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHD---LERLSVTL  270 (517)
Q Consensus       195 ~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v-~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d---~~~la~~l  270 (517)
T Consensus        45 ----~~~~~~f~~Ev~il~~l~H-----pNIV~l~G~~~-~~~~~~lV~Ey~~~GsL~~~l~~~~~~l~~~~~~~ia~~i  114 (262)
T cd05077          45 ----RDISLAFFETASMMRQVSH-----KHIVLLYGVCV-RDQENIMVEEFVQFGPLDLFMHRKSDPLTTPWKFQVAKQL  114 (262)
T ss_pred             ----CHHHHHHHHHHHHHHHCCC-----CCCCCEEEEEE-ECCEEEEEEECCCCCCHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf             ----0689999999999983899-----79872999999-8999899877999896999984189989999999999999


Q ss_pred             HHHHHHHHHHCCEECCCCCCCEEEEECCCC-------EEEEECCHHE
Q ss_conf             999999897448661787862289802895-------3574340312
Q gi|254780623|r  271 VQSFLLHTLRDGFFHADLHPGNLFVDSKGY-------IVAVDMGITG  310 (517)
Q Consensus       271 ~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~-------i~~lDfG~vg  310 (517)
T Consensus       115 a~gl-~yLH~~~iiHrDlk~~NiLl~~~~~~~~~~~~~KlsDfG~~~  160 (262)
T cd05077         115 ASAL-SYLEDKDLVHGNVCTKNILLAREGIDTEGGPFIKLSDPGIPI  160 (262)
T ss_pred             HHHH-HHHHHCCCCCCCCCHHHEEEECCCCCCCCCCCEEECCCCCCC
T ss_conf             9999-999839943774343007882345555457736961588873