HHsearch alignment for GI: 254780623 and conserved domain: cd05077
>cd05077 PTK_Jak1_rpt1 Pseudokinase (Repeat 1) Domain of the Protein Tyrosine Kinase, Janus kinase 1. Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom
Probab=98.15 E-value=9.1e-06 Score=63.88 Aligned_cols=139 Identities=11% Similarity=0.164 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHHEECCCCCC----------EEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH
Q ss_conf 66677888865555021288872----------36876403104688777788999875321146854334691799999
Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYR----------KVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRA 194 (517)
Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~----------~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e 194 (517)
T Consensus 1 e~lG~G~fG~VykG~~~~~~~~~~~~~~~~~~v~VaiK~~~~~~------------------------------------ 44 (262)
T cd05077 1 EHLGRGTRTNIYSGTLNYKSDDDEDGYSYEKEIKVVLKVLDPSH------------------------------------ 44 (262)
T ss_pred CCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEEEECCCCC------------------------------------
T ss_conf 98876899779717970788643334455237899998679755------------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCC---HHHHHHHH
Q ss_conf 9988788865599998898720244677664-3000010221783353002478632426773320022---56899999
Q gi|254780623|r 195 LEQVTKMEMDLRLEAAAFSEMAENTVKDQGF-RVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHD---LERLSVTL 270 (517)
Q Consensus 195 ~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v-~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d---~~~la~~l 270 (517)
T Consensus 45 ----~~~~~~f~~Ev~il~~l~H-----pNIV~l~G~~~-~~~~~~lV~Ey~~~GsL~~~l~~~~~~l~~~~~~~ia~~i 114 (262)
T cd05077 45 ----RDISLAFFETASMMRQVSH-----KHIVLLYGVCV-RDQENIMVEEFVQFGPLDLFMHRKSDPLTTPWKFQVAKQL 114 (262)
T ss_pred ----CHHHHHHHHHHHHHHHCCC-----CCCCCEEEEEE-ECCEEEEEEECCCCCCHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf ----0689999999999983899-----79872999999-8999899877999896999984189989999999999999
Q ss_pred HHHHHHHHHHCCEECCCCCCCEEEEECCCC-------EEEEECCHHE
Q ss_conf 999999897448661787862289802895-------3574340312
Q gi|254780623|r 271 VQSFLLHTLRDGFFHADLHPGNLFVDSKGY-------IVAVDMGITG 310 (517)
Q Consensus 271 ~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~-------i~~lDfG~vg 310 (517)
T Consensus 115 a~gl-~yLH~~~iiHrDlk~~NiLl~~~~~~~~~~~~~KlsDfG~~~ 160 (262)
T cd05077 115 ASAL-SYLEDKDLVHGNVCTKNILLAREGIDTEGGPFIKLSDPGIPI 160 (262)
T ss_pred HHHH-HHHHHCCCCCCCCCHHHEEEECCCCCCCCCCCEEECCCCCCC
T ss_conf 9999-999839943774343007882345555457736961588873