HHsearch alignment for GI: 254780623 and conserved domain: cd05081
>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (Repeat 2) Domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3. Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th
Probab=98.72 E-value=9.1e-08 Score=79.35 Aligned_cols=144 Identities=17% Similarity=0.202 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHHHEE--CCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 66677888865555021--2888723687640310468877778899987532114685433469179999999887888
Q gi|254780623|r 125 DPIAAASIAQVHPAVVH--DINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKME 202 (517)
Q Consensus 125 ePlasASiaQVh~A~l~--d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~E 202 (517)
T Consensus 10 ~~iG~G~fG~V~~~~~~~~~~~~g~~vAiK~~~~~~------------------------------~---~~-------~ 49 (284)
T cd05081 10 QQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHST------------------------------A---EH-------L 49 (284)
T ss_pred EEECCCCCEEEEEEEECCEECCCCCEEEEEEECCCC------------------------------H---HH-------H
T ss_conf 997147385999879825057888199999988778------------------------------6---88-------9
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC-EEEEECCCCCCCCHHHHHHHHCCC---HHHHHHHHHHHHHHHH
Q ss_conf 655999988987202446776643000010221783-353002478632426773320022---5689999999999989
Q gi|254780623|r 203 MDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD-VITMEWIDGVKISDTEKLRACGHD---LERLSVTLVQSFLLHT 278 (517)
Q Consensus 203 lD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~-VLvmE~i~G~~i~d~~~l~~~~~d---~~~la~~l~~~~~~qi 278 (517)
T Consensus 50 ~~~~~Ei~il~~l~HpN----Iv~~~g~~~~~~~~~~~lV~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~~~ia~g-l~yL 124 (284)
T cd05081 50 RDFEREIEILKSLQHDN----IVKYKGVCYSAGRRNLRLVMEYLPYGSLRDYLQKHRERLDHRKLLLYASQICKG-MEYL 124 (284)
T ss_pred HHHHHHHHHHHHCCCCC----EEEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHH-HHHH
T ss_conf 99999999999768998----825888997289967999996489899899997478889999999999999999-9988
Q ss_pred HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECC
Q ss_conf 74486617878622898028953574340312169
Q gi|254780623|r 279 LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLS 313 (517)
Q Consensus 279 ~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~ 313 (517)
T Consensus 125 H~~~iiHrDlK~~NILld~~~~~Kl~DFGla~~~~ 159 (284)
T cd05081 125 GSKRYVHRDLATRNILVESENRVKIGDFGLTKVLP 159 (284)
T ss_pred HHCCCCCCCCCHHEEEECCCCCEEEECCCCCEECC
T ss_conf 33891416676420798899958990367522668