HHsearch alignment for GI: 254780623 and conserved domain: cd05081

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (Repeat 2) Domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3. Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th
Probab=98.72  E-value=9.1e-08  Score=79.35  Aligned_cols=144  Identities=17%  Similarity=0.202  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHHHHHHEE--CCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021--2888723687640310468877778899987532114685433469179999999887888
Q gi|254780623|r  125 DPIAAASIAQVHPAVVH--DINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKME  202 (517)
Q Consensus       125 ePlasASiaQVh~A~l~--d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~E  202 (517)
T Consensus        10 ~~iG~G~fG~V~~~~~~~~~~~~g~~vAiK~~~~~~------------------------------~---~~-------~   49 (284)
T cd05081          10 QQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHST------------------------------A---EH-------L   49 (284)
T ss_pred             EEECCCCCEEEEEEEECCEECCCCCEEEEEEECCCC------------------------------H---HH-------H
T ss_conf             997147385999879825057888199999988778------------------------------6---88-------9


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC-EEEEECCCCCCCCHHHHHHHHCCC---HHHHHHHHHHHHHHHH
Q ss_conf             655999988987202446776643000010221783-353002478632426773320022---5689999999999989
Q gi|254780623|r  203 MDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD-VITMEWIDGVKISDTEKLRACGHD---LERLSVTLVQSFLLHT  278 (517)
Q Consensus       203 lD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~-VLvmE~i~G~~i~d~~~l~~~~~d---~~~la~~l~~~~~~qi  278 (517)
T Consensus        50 ~~~~~Ei~il~~l~HpN----Iv~~~g~~~~~~~~~~~lV~Ey~~~GsL~~~L~~~~~~~~~~~~~~~~~~ia~g-l~yL  124 (284)
T cd05081          50 RDFEREIEILKSLQHDN----IVKYKGVCYSAGRRNLRLVMEYLPYGSLRDYLQKHRERLDHRKLLLYASQICKG-MEYL  124 (284)
T ss_pred             HHHHHHHHHHHHCCCCC----EEEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHH-HHHH
T ss_conf             99999999999768998----825888997289967999996489899899997478889999999999999999-9988


Q ss_pred             HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECC
Q ss_conf             74486617878622898028953574340312169
Q gi|254780623|r  279 LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLS  313 (517)
Q Consensus       279 ~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~  313 (517)
T Consensus       125 H~~~iiHrDlK~~NILld~~~~~Kl~DFGla~~~~  159 (284)
T cd05081         125 GSKRYVHRDLATRNILVESENRVKIGDFGLTKVLP  159 (284)
T ss_pred             HHCCCCCCCCCHHEEEECCCCCEEEECCCCCEECC
T ss_conf             33891416676420798899958990367522668