HHsearch alignment for GI: 254780623 and conserved domain: cd05089
>cd05089 PTKc_Tie1 Catalytic Domain of the Protein Tyrosine Kinase, Tie1. Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.
Probab=98.55 E-value=5.8e-07 Score=73.12 Aligned_cols=142 Identities=15% Similarity=0.160 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 67666778888655550212888723687640310468877778899987532114685433469179999999887888
Q gi|254780623|r 123 FDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKME 202 (517)
Q Consensus 123 fdePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~E 202 (517)
T Consensus 6 ~~~~IG~G~fG~Vyk~~~~~~g~~~~vavK~~~~~~~~~---------------------------------------~~ 46 (297)
T cd05089 6 FEDVIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEFASEN---------------------------------------DH 46 (297)
T ss_pred EEEEEEECCCCEEEEEEEECCCEEEEEEEEEECCCCCHH---------------------------------------HH
T ss_conf 986995178959999999379809999999977335847---------------------------------------89
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHC--CCCEEEEECCCCCCCCHHHHHHH---------------HCCCHH-
Q ss_conf 655999988987202446776643000010221--78335300247863242677332---------------002256-
Q gi|254780623|r 203 MDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRT--ERDVITMEWIDGVKISDTEKLRA---------------CGHDLE- 264 (517)
Q Consensus 203 lD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~s--t~~VLvmE~i~G~~i~d~~~l~~---------------~~~d~~- 264 (517)
T Consensus 47 ~~~~~E~~il~~l~~----HpnI--V~l~g~~~~~~~~~iV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~ 120 (297)
T cd05089 47 RDFAGELEVLCKLGH----HPNI--INLLGACENRGYLYIAIEYAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQ 120 (297)
T ss_pred HHHHHHHHHHHHHCC----CCCE--EEEEEEECCCCEEEEEEECCCCCCHHHHHHHCCCCCCCCHHHHHCCCCCCCCHHH
T ss_conf 999999999987128----9988--8886798239878999970599879999973565544610222036657789999
Q ss_pred --HHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHE
Q ss_conf --8999999999998974486617878622898028953574340312
Q gi|254780623|r 265 --RLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITG 310 (517)
Q Consensus 265 --~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg 310 (517)
T Consensus 121 ~l~i~~qia~g-l~yLH~~~IiHRDLKp~NILl~~~~~~KI~DFGls~ 167 (297)
T cd05089 121 LLQFASDVATG-MQYLSEKQFIHRDLAARNVLVGENLASKIADFGLSR 167 (297)
T ss_pred HHHHHHHHHHH-HHHHHCCCCCCCCCCHHEEEECCCCCEEEEECCCCC
T ss_conf 99999999999-998840991557566422899899988980156786