HHsearch alignment for GI: 254780623 and conserved domain: cd05094

>cd05094 PTKc_TrkC Catalytic Domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C. Protein Tyrosine Kinase (PTK) family; Tropomyosin related kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n
Probab=98.51  E-value=3.2e-07  Score=75.08  Aligned_cols=143  Identities=13%  Similarity=0.217  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHHHHHHHEECC---CCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             76667788886555502128---887236876403104688777788999875321146854334691799999998878
Q gi|254780623|r  124 DDPIAAASIAQVHPAVVHDI---NGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTK  200 (517)
Q Consensus       124 dePlasASiaQVh~A~l~d~---~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~  200 (517)
T Consensus        10 ~~~iG~G~FG~Vy~a~~~~~~~~~~~~~vAvK~l~~------------------------~-----~-----------~~   49 (291)
T cd05094          10 KRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKD------------------------P-----T-----------LA   49 (291)
T ss_pred             EEEEECCCCCEEEEEEECCCCCCCCCEEEEEEEECC------------------------C-----C-----------HH
T ss_conf             049813768699999981676377777999999787------------------------4-----5-----------57


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCC-CCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHH---------------HCCC--
Q ss_conf             886559999889872024467766-4300001022178335300247863242677332---------------0022--
Q gi|254780623|r  201 MEMDLRLEAAAFSEMAENTVKDQG-FRVPKIDWNRTERDVITMEWIDGVKISDTEKLRA---------------CGHD--  262 (517)
Q Consensus       201 ~ElD~~~Ea~n~~~~~~~~~~~~~-v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~---------------~~~d--  262 (517)
T Consensus        50 ~~~~~~~E~~il~~l~H-----pnIV~l~g~~~~-~~~~~lv~Ey~~~G~L~~~l~~~~~~~~~~~~~~p~~~~~~l~~~  123 (291)
T cd05094          50 ARKDFQREAELLTNLQH-----EHIVKFYGVCGD-GDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLS  123 (291)
T ss_pred             HHHHHHHHHHHHHHCCC-----CCCCCEEEEEEE-CCEEEEEEEECCCCCHHHHHHHCCCCCCCCCCCCCHHCCCCCCHH
T ss_conf             89999999999985899-----887738889823-998899999169992999998619741001234420104778999


Q ss_pred             -HHHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECC
Q ss_conf             -568999999999998974486617878622898028953574340312169
Q gi|254780623|r  263 -LERLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLS  313 (517)
Q Consensus       263 -~~~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~  313 (517)
T Consensus       124 ~~~~i~~qia~gl-~yLH~~~iiHRDLKp~NILl~~~~~~Ki~DFGlsr~~~  174 (291)
T cd05094         124 QMLHIASQIASGM-VYLASQHFVHRDLATRNCLVGANLLVKIGDFGMSRDVY  174 (291)
T ss_pred             HHHHHHHHHHHHH-HHHHHCCCCCCCCCCCEEEECCCCCEEEEECCCCCCCC
T ss_conf             9999999999999-99975892656776405998799978994465654067