HHsearch alignment for GI: 254780623 and conserved domain: cd05097

>cd05097 PTKc_DDR_like Catalytic Domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Discoidin domain receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including
Probab=98.82  E-value=8.7e-08  Score=79.53  Aligned_cols=143  Identities=18%  Similarity=0.267  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHHHHHHHHHEECC----------CCCC--EEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHH
Q ss_conf             8676667788886555502128----------8872--368764031046887777889998753211468543346917
Q gi|254780623|r  122 EFDDPIAAASIAQVHPAVVHDI----------NGYR--KVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFS  189 (517)
Q Consensus       122 ~fdePlasASiaQVh~A~l~d~----------~~g~--~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~  189 (517)
T Consensus         8 ~l~~~iG~G~FG~Vy~~~~~g~~~~~~~~~~~~~~~~~~VAvK~l~~~~~~~----------------------------   59 (295)
T cd05097           8 RLKEKLGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADVTKT----------------------------   59 (295)
T ss_pred             EEEEEECCCCCCEEEEEEECCCCHHCCCCCCCCCCCEEEEEEEEECCCCCHH----------------------------
T ss_conf             8833981374859896488474210133553458945799999978658978----------------------------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCH--HCCCCEEEEECCCCCCCCHHHHHHHH--------
Q ss_conf             99999998878886559999889872024467766430000102--21783353002478632426773320--------
Q gi|254780623|r  190 AVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWN--RTERDVITMEWIDGVKISDTEKLRAC--------  259 (517)
Q Consensus       190 ~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~--~st~~VLvmE~i~G~~i~d~~~l~~~--------  259 (517)
T Consensus        60 -----------~~~~f~~E~~il~~l~H-----pNI--V~l~G~~~~~~~~~lV~Ey~~~GsL~~~l~~~~~~~~~~~~~  121 (295)
T cd05097          60 -----------ARNDFLKEIKIMSRLKN-----PNI--IRLLGVCVSDDPLCMITEYMENGDLNQFLSQREIESTFTHAN  121 (295)
T ss_pred             -----------HHHHHHHHHHHHHHCCC-----CCC--CCEEEEEEECCEEEEEEECCCCCCHHHHHHHCCCCCCCCCCC
T ss_conf             -----------99999999999986799-----799--889899998996799997377993999986223332112235


Q ss_pred             ---CCCHH---HHHHHHHH--HHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECC
Q ss_conf             ---02256---89999999--99998974486617878622898028953574340312169
Q gi|254780623|r  260 ---GHDLE---RLSVTLVQ--SFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLS  313 (517)
Q Consensus       260 ---~~d~~---~la~~l~~--~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~  313 (517)
T Consensus       122 ~~~~l~~~~~l~ia~qia~gl~yL---h~~~iiHrDLK~~NiLl~~~~~~Ki~DFGlar~~~  180 (295)
T cd05097         122 NIPSVSIANLLYMAVQIASGMKYL---ASLNFVHRDLATRNCLVGNHYTIKIADFGMSRNLY  180 (295)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHH---HHCCEECCCCCCCEEEECCCCCEEEEECCCCCCCC
T ss_conf             778668999999999999999998---54985526667040888899978996442552567