HHsearch alignment for GI: 254780623 and conserved domain: cd05104

>cd05104 PTKc_Kit Catalytic Domain of the Protein Tyrosine Kinase, Kit. Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce
Probab=98.29  E-value=7.4e-06  Score=64.54  Aligned_cols=36  Identities=17%  Similarity=0.326  Sum_probs=30.8

Q ss_pred             HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             744866178786228980289535743403121698
Q gi|254780623|r  279 LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       279 ~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
T Consensus       231 ~~~~~iHrDLaaRNvlv~~~~~~Ki~DFGlsr~~~~  266 (375)
T cd05104         231 ASKNCIHRDLAARNILLTHGRITKICDFGLARDIRN  266 (375)
T ss_pred             HHCCCCCCCCCCCCEEECCCCCEEECCCCCCEECCC
T ss_conf             868904361574625666999189797622125257