HHsearch alignment for GI: 254780623 and conserved domain: cd05104
>cd05104 PTKc_Kit Catalytic Domain of the Protein Tyrosine Kinase, Kit. Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce
Probab=98.29 E-value=7.4e-06 Score=64.54 Aligned_cols=36 Identities=17% Similarity=0.326 Sum_probs=30.8
Q ss_pred HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf 744866178786228980289535743403121698
Q gi|254780623|r 279 LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517)
Q Consensus 279 ~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517)
T Consensus 231 ~~~~~iHrDLaaRNvlv~~~~~~Ki~DFGlsr~~~~ 266 (375)
T cd05104 231 ASKNCIHRDLAARNILLTHGRITKICDFGLARDIRN 266 (375)
T ss_pred HHCCCCCCCCCCCCEEECCCCCEEECCCCCCEECCC
T ss_conf 868904361574625666999189797622125257