HHsearch alignment for GI: 254780623 and conserved domain: cd05108
>cd05108 PTKc_EGFR Catalytic Domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor. Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor
Probab=98.49 E-value=1.9e-06 Score=69.21 Aligned_cols=146 Identities=16% Similarity=0.146 Sum_probs=88.1
Q ss_pred HHH--HHHHHHHHHHHHHHHEECCCCCCE----EEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
Q ss_conf 867--666778888655550212888723----68764031046887777889998753211468543346917999999
Q gi|254780623|r 122 EFD--DPIAAASIAQVHPAVVHDINGYRK----VAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRAL 195 (517)
Q Consensus 122 ~fd--ePlasASiaQVh~A~l~d~~~g~~----VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~ 195 (517)
T Consensus 8 dy~~~~~LG~G~fG~Vykg~~~~--~g~~~~~~VAvK~l~~~~~~-----------------------------~----- 51 (316)
T cd05108 8 EFKKIKVLGSGAFGTVYKGLWIP--EGEKVKIPVAIKELREATSP-----------------------------K----- 51 (316)
T ss_pred HCEECEEEECCCCCEEEEEEEEC--CCCEEEEEEEEEEECCCCCH-----------------------------H-----
T ss_conf 59554087118784999689947--99888689999996644587-----------------------------8-----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCH-HCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHH---HHHHH
Q ss_conf 98878886559999889872024467766430000102-217833530024786324267733200225689---99999
Q gi|254780623|r 196 EQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWN-RTERDVITMEWIDGVKISDTEKLRACGHDLERL---SVTLV 271 (517)
Q Consensus 196 ~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~-~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~l---a~~l~ 271 (517)
T Consensus 52 -----~~~~~~~E~~il~~l~H-----pn--IV~l~g~~~~~~~~lv~e~~~~G~L~~~l~~~~~~l~~~~~~~~~~qia 119 (316)
T cd05108 52 -----ANKEILDEAYVMASVDN-----PH--VCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIA 119 (316)
T ss_pred -----HHHHHHHHHHHHHHCCC-----CC--EEEEEEEEEECCEEEEEEECCCCCHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf -----99999999999986799-----88--8579999974885899997799888999976147879999999999999
Q ss_pred HHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHHH
Q ss_conf 999998974486617878622898028953574340312169899
Q gi|254780623|r 272 QSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRE 316 (517)
Q Consensus 272 ~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~ 316 (517)
T Consensus 120 ~g-L~yLH~~~IIHRDLKp~NILl~~~~~vKI~DFGlak~~~~~~ 163 (316)
T cd05108 120 KG-MNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEE 163 (316)
T ss_pred HH-HHHHHHCCEECCCCCCCEEEECCCCCEEEEECCCCEECCCCC
T ss_conf 99-999997793215666111668899968996547656678988