HHsearch alignment for GI: 254780623 and conserved domain: cd05116

>cd05116 PTKc_Syk Catalytic Domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase. Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio
Probab=98.70  E-value=3.4e-07  Score=74.97  Aligned_cols=141  Identities=18%  Similarity=0.220  Sum_probs=89.3

Q ss_pred             HHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             66778888655550212888723687640310468877778899987532114685433469179999999887888655
Q gi|254780623|r  126 PIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDL  205 (517)
Q Consensus       126 PlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~  205 (517)
T Consensus         2 ~LG~G~fG~V~~g~~~~~~~~~~VAvK~~~~~~~--------------------~~--------~~~~----------~~   43 (257)
T cd05116           2 ELGSGNFGTVKKGMYKMKKSEKTVAVKILKNDNN--------------------DP--------ALKD----------EL   43 (257)
T ss_pred             CCCCCCCEEEEEEEEEECCCCEEEEEEEECCCCC--------------------CH--------HHHH----------HH
T ss_conf             0430888099998999789997999999853569--------------------97--------9999----------99


Q ss_pred             HHHHHHHHHHHCCCCCCCC-CCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHH-CCC---HHHHHHHHHHHHHHHHHH
Q ss_conf             9999889872024467766-43000010221783353002478632426773320-022---568999999999998974
Q gi|254780623|r  206 RLEAAAFSEMAENTVKDQG-FRVPKIDWNRTERDVITMEWIDGVKISDTEKLRAC-GHD---LERLSVTLVQSFLLHTLR  280 (517)
Q Consensus       206 ~~Ea~n~~~~~~~~~~~~~-v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~-~~d---~~~la~~l~~~~~~qi~~  280 (517)
T Consensus        44 ~~E~~~l~~l~H-----pnIv~~~g~~~--~~~~~ivmE~~~~g~L~~~L--~~~~~~~~~~~~~~~~qia~g-l~yLH~  113 (257)
T cd05116          44 LREANVMQQLDN-----PYIVRMIGICE--AESWMLVMELAELGPLNKFL--QKNKHVTEKNITELVHQVSMG-MKYLEE  113 (257)
T ss_pred             HHHHHHHHHCCC-----CCEEEEEEEEE--CCCEEEEEECCCCCCHHHHH--HHCCCCCHHHHHHHHHHHHHH-HHHHHH
T ss_conf             999999986799-----98805889995--89479999858999999998--537999999999999999999-999986


Q ss_pred             CCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             4866178786228980289535743403121698
Q gi|254780623|r  281 DGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       281 ~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
T Consensus       114 ~~ivHrDLK~~NiLl~~~~~~Kl~DFGls~~~~~  147 (257)
T cd05116         114 TNFVHRDLAARNVLLVTQHYAKISDFGLSKALGA  147 (257)
T ss_pred             CCCCCCCCCHHHEEECCCCCEEEEECCCCEECCC
T ss_conf             8937661676558884899789997476426679