HHsearch alignment for GI: 254780623 and conserved domain: cd05164
>cd05164 PIKKc Phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily, catalytic domain; The PIKK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. Members include ATM (Ataxia telangiectasia mutated), ATR (Ataxia telangiectasia and Rad3-related), TOR (Target of rapamycin), SMG-1 (Suppressor of morphogenetic effect on genitalia-1), and DNA-PK (DNA-dependent protein kinase). PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). They show strong preference for phosphorylating serine/threonine residues followed by a glutamine and are also referred to as (S/T)-Q-directed kinases. They all contain a FATC (FRAP, ATM and TRRAP, C-terminal) d
Probab=95.53 E-value=0.034 Score=36.15 Aligned_cols=84 Identities=18% Similarity=0.194 Sum_probs=44.7
Q ss_pred CCCCHHCCCHHCCCCEEEEECCCCCC-CCHHH--HHHHHCCCHHH---HHHHHHHHHHH-HHHHCCEECCCCCCCEEEEE
Q ss_conf 64300001022178335300247863-24267--73320022568---99999999999-89744866178786228980
Q gi|254780623|r 224 GFRVPKIDWNRTERDVITMEWIDGVK-ISDTE--KLRACGHDLER---LSVTLVQSFLL-HTLRDGFFHADLHPGNLFVD 296 (517)
Q Consensus 224 ~v~vP~vy~~~st~~VLvmE~i~G~~-i~d~~--~l~~~~~d~~~---la~~l~~~~~~-qi~~~GfFHaDPHpGNi~v~ 296 (517)
T Consensus 69 ~~~~Y~Vip--ls~~~GlIe~V~~~~tl~~il~~~~~~~~~~~~~~~~~r~~F~~S~A~~sv~~yilglgDRH~~NIl~~ 146 (222)
T cd05164 69 TIRTYAVIP--LNSRSGLIEWVEGTTTLKPVLKKWFWLQFPDPEQWFAARKNYTRSTAVMSIVGYILGLGDRHLDNILID 146 (222)
T ss_pred EEECCEEEE--CCCCCEEEEEECCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEE
T ss_conf 336351876--479841699918961267999999999792989999999999999999999999712588886657776
Q ss_pred C-CCCEEEEECCHH
Q ss_conf 2-895357434031
Q gi|254780623|r 297 S-KGYIVAVDMGIT 309 (517)
Q Consensus 297 ~-dg~i~~lDfG~v 309 (517)
T Consensus 147 ~~tG~v~HIDFg~~ 160 (222)
T cd05164 147 RETGEVVHIDFGCI 160 (222)
T ss_pred CCCCCEEEEEHHHH
T ss_conf 48774899841876