HHsearch alignment for GI: 254780623 and conserved domain: cd05170
>cd05170 PIKKc_SMG1 Suppressor of morphogenetic effect on genitalia-1 (SMG-1), catalytic domain; The SMG-1 catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. SMG-1 is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). In addition to its catalytic domain, SMG-1 contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. SMG-1 plays a critical role in the mRNA surveillance mechanism known as non-sense mediated mRNA decay (NMD). NMD protects the cells from the accumulation of aberrant mRNAs with premature termination codons (PTCs) generated by geno
Probab=93.13 E-value=0.077 Score=33.42 Aligned_cols=27 Identities=26% Similarity=0.452 Sum_probs=23.8
Q ss_pred EECCCCCCCEEEEE-CCCCEEEEECCHH
Q ss_conf 66178786228980-2895357434031
Q gi|254780623|r 283 FFHADLHPGNLFVD-SKGYIVAVDMGIT 309 (517)
Q Consensus 283 fFHaDPHpGNi~v~-~dg~i~~lDfG~v 309 (517)
T Consensus 211 lGLGDRH~~NILi~~~tG~vvHIDfg~~ 238 (307)
T cd05170 211 IGLGDRHLDNVLIDLKTGEVVHIDYNVC 238 (307)
T ss_pred HCCCCCCCCEEEEECCCCCEEEEECHHH
T ss_conf 2367898640899868788899951233