HHsearch alignment for GI: 254780623 and conserved domain: cd05583
>cd05583 STKc_MSK_N STKc_MSK_N: Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines. This triggers phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active
Probab=98.70 E-value=1.3e-07 Score=78.07 Aligned_cols=146 Identities=12% Similarity=0.193 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHHHEE-CCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 66677888865555021-28887236876403104688777788999875321146854334691799999998878886
Q gi|254780623|r 125 DPIAAASIAQVHPAVVH-DINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEM 203 (517)
Q Consensus 125 ePlasASiaQVh~A~l~-d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~El 203 (517)
T Consensus 6 ~~iG~G~fg~V~~a~~~~~~~~~~~~AiK~~~k~~~---~~~~~-----------------------~~~----~----- 50 (288)
T cd05583 6 RVLGTGAYGKVFLVRKVGGHDAGKLYAMKVLKKATI---VQKAK-----------------------TAE----H----- 50 (288)
T ss_pred EEEECCCCEEEEEEEECCCCCCCCEEEEEEECHHHH---HHHHH-----------------------HHH----H-----
T ss_conf 794148883999999855378795899999807884---12267-----------------------899----9-----
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCC--CCEEEEECCCCCCCCHHHHHHHHCCC---HHHHHHHHHHHHHHHH
Q ss_conf 559999889872024467766430000102217--83353002478632426773320022---5689999999999989
Q gi|254780623|r 204 DLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTE--RDVITMEWIDGVKISDTEKLRACGHD---LERLSVTLVQSFLLHT 278 (517)
Q Consensus 204 D~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st--~~VLvmE~i~G~~i~d~~~l~~~~~d---~~~la~~l~~~~~~qi 278 (517)
T Consensus 51 -~~~E~~~l~~l~~----~~~--Iv~l~~~~~~~~~~yivmE~~~gg~L~~~l~-~~~~l~e~~~~~~~~qil~~-l~yl 121 (288)
T cd05583 51 -TRTERQVLEAVRR----CPF--LVTLHYAFQTDTKLHLILDYVNGGELFTHLY-QREHFTESEVRVYIAEIVLA-LDHL 121 (288)
T ss_pred -HHHHHHHHHHCCC----CCC--EEEEEEEEEECCEEEEEEECCCCCCHHHHHH-HCCCCCHHHHHHHHHHHHHH-HHHH
T ss_conf -9999999997059----997--7799999998999999997889988999998-75998999999999999999-9999
Q ss_pred HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf 744866178786228980289535743403121698
Q gi|254780623|r 279 LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517)
Q Consensus 279 ~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517)
T Consensus 122 H~~~ivHRDiKp~NILi~~~~~ikl~DFG~a~~~~~ 157 (288)
T cd05583 122 HQLGIIYRDIKLENILLDSEGHVVLTDFGLSKEFLA 157 (288)
T ss_pred HHCCEEECCCCHHHCCCCCCCCEEEEECCCCEECCC
T ss_conf 988903166771324345889989988675734358