HHsearch alignment for GI: 254780623 and conserved domain: cd05583

>cd05583 STKc_MSK_N STKc_MSK_N: Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines. This triggers phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active
Probab=98.70  E-value=1.3e-07  Score=78.07  Aligned_cols=146  Identities=12%  Similarity=0.193  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHHHHHHEE-CCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021-28887236876403104688777788999875321146854334691799999998878886
Q gi|254780623|r  125 DPIAAASIAQVHPAVVH-DINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEM  203 (517)
Q Consensus       125 ePlasASiaQVh~A~l~-d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~El  203 (517)
T Consensus         6 ~~iG~G~fg~V~~a~~~~~~~~~~~~AiK~~~k~~~---~~~~~-----------------------~~~----~-----   50 (288)
T cd05583           6 RVLGTGAYGKVFLVRKVGGHDAGKLYAMKVLKKATI---VQKAK-----------------------TAE----H-----   50 (288)
T ss_pred             EEEECCCCEEEEEEEECCCCCCCCEEEEEEECHHHH---HHHHH-----------------------HHH----H-----
T ss_conf             794148883999999855378795899999807884---12267-----------------------899----9-----


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCC--CCEEEEECCCCCCCCHHHHHHHHCCC---HHHHHHHHHHHHHHHH
Q ss_conf             559999889872024467766430000102217--83353002478632426773320022---5689999999999989
Q gi|254780623|r  204 DLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTE--RDVITMEWIDGVKISDTEKLRACGHD---LERLSVTLVQSFLLHT  278 (517)
Q Consensus       204 D~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st--~~VLvmE~i~G~~i~d~~~l~~~~~d---~~~la~~l~~~~~~qi  278 (517)
T Consensus        51 -~~~E~~~l~~l~~----~~~--Iv~l~~~~~~~~~~yivmE~~~gg~L~~~l~-~~~~l~e~~~~~~~~qil~~-l~yl  121 (288)
T cd05583          51 -TRTERQVLEAVRR----CPF--LVTLHYAFQTDTKLHLILDYVNGGELFTHLY-QREHFTESEVRVYIAEIVLA-LDHL  121 (288)
T ss_pred             -HHHHHHHHHHCCC----CCC--EEEEEEEEEECCEEEEEEECCCCCCHHHHHH-HCCCCCHHHHHHHHHHHHHH-HHHH
T ss_conf             -9999999997059----997--7799999998999999997889988999998-75998999999999999999-9999


Q ss_pred             HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             744866178786228980289535743403121698
Q gi|254780623|r  279 LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       279 ~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
T Consensus       122 H~~~ivHRDiKp~NILi~~~~~ikl~DFG~a~~~~~  157 (288)
T cd05583         122 HQLGIIYRDIKLENILLDSEGHVVLTDFGLSKEFLA  157 (288)
T ss_pred             HHCCEEECCCCHHHCCCCCCCCEEEEECCCCEECCC
T ss_conf             988903166771324345889989988675734358