HHsearch alignment for GI: 254780623 and conserved domain: cd05614

>cd05614 STKc_MSK2_N STKc_MSK2_N: Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) of NTD, which facilitates the phosphorylation of the A-loop and activates the
Probab=98.76  E-value=2.5e-08  Score=83.78  Aligned_cols=143  Identities=15%  Similarity=0.234  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHHHHHHEE-CCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021-28887236876403104688777788999875321146854334691799999998878886
Q gi|254780623|r  125 DPIAAASIAQVHPAVVH-DINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEM  203 (517)
Q Consensus       125 ePlasASiaQVh~A~l~-d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~El  203 (517)
T Consensus         6 k~LG~G~fG~Vylv~~~~~~~tg~~~AiK~i~k~~~----------------~~~----------~~~~----~~~----   51 (332)
T cd05614           6 KVLGTGAYGKVFLVRKVTGHDTGKLYAMKVLQKAAL----------------VQK----------AKTV----EHT----   51 (332)
T ss_pred             EEEECCCCEEEEEEEECCCCCCCCEEEEEEEEHHHH----------------CCC----------HHHH----HHH----
T ss_conf             795138880899999853078895899999817884----------------221----------7899----999----


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHC-CCH---HHHHHHHHHHHHHH
Q ss_conf             5599998898720244677664300001022178--33530024786324267733200-225---68999999999998
Q gi|254780623|r  204 DLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACG-HDL---ERLSVTLVQSFLLH  277 (517)
Q Consensus       204 D~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~-~d~---~~la~~l~~~~~~q  277 (517)
T Consensus        52 --~~E~~il~~~~----~~p~i--v~l~~~f~~~~~~ylVmEy~~gG~L~~~--l~~~~~l~e~~~~~~~~qi~~a-L~y  120 (332)
T cd05614          52 --RTERNVLEHVR----QSPFL--VTLHYAFQTEAKLHLILDYVSGGEMFTH--LYQRDNFSEDEVRFYSGEIILA-LEH  120 (332)
T ss_pred             --HHHHHHHHHCC----CCCCE--EEEEEEEEECCEEEEEEECCCCCCHHHH--HHHCCCCCHHHHHHHHHHHHHH-HHH
T ss_conf             --99999999626----89977--8999999879989999967799989999--9864999999999999999999-999


Q ss_pred             HHHCCEECCCCCCCEEEEECCCCEEEEECCHHEEC
Q ss_conf             97448661787862289802895357434031216
Q gi|254780623|r  278 TLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRL  312 (517)
Q Consensus       278 i~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l  312 (517)
T Consensus       121 LH~~gIiHRDlKPeNILl~~~g~ikL~DFGlak~~  155 (332)
T cd05614         121 LHKLGIVYRDIKLENILLDSEGHVVLTDFGLSKEF  155 (332)
T ss_pred             HHHCCCEECCCCHHHEEECCCCCEEEECCHHHHHH
T ss_conf             98788652567667700358998896024013655