HHsearch alignment for GI: 254780623 and conserved domain: cd05614
>cd05614 STKc_MSK2_N STKc_MSK2_N: Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) of NTD, which facilitates the phosphorylation of the A-loop and activates the
Probab=98.76 E-value=2.5e-08 Score=83.78 Aligned_cols=143 Identities=15% Similarity=0.234 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHHHEE-CCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 66677888865555021-28887236876403104688777788999875321146854334691799999998878886
Q gi|254780623|r 125 DPIAAASIAQVHPAVVH-DINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEM 203 (517)
Q Consensus 125 ePlasASiaQVh~A~l~-d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~El 203 (517)
T Consensus 6 k~LG~G~fG~Vylv~~~~~~~tg~~~AiK~i~k~~~----------------~~~----------~~~~----~~~---- 51 (332)
T cd05614 6 KVLGTGAYGKVFLVRKVTGHDTGKLYAMKVLQKAAL----------------VQK----------AKTV----EHT---- 51 (332)
T ss_pred EEEECCCCEEEEEEEECCCCCCCCEEEEEEEEHHHH----------------CCC----------HHHH----HHH----
T ss_conf 795138880899999853078895899999817884----------------221----------7899----999----
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHC-CCH---HHHHHHHHHHHHHH
Q ss_conf 5599998898720244677664300001022178--33530024786324267733200-225---68999999999998
Q gi|254780623|r 204 DLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACG-HDL---ERLSVTLVQSFLLH 277 (517)
Q Consensus 204 D~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~-~d~---~~la~~l~~~~~~q 277 (517)
T Consensus 52 --~~E~~il~~~~----~~p~i--v~l~~~f~~~~~~ylVmEy~~gG~L~~~--l~~~~~l~e~~~~~~~~qi~~a-L~y 120 (332)
T cd05614 52 --RTERNVLEHVR----QSPFL--VTLHYAFQTEAKLHLILDYVSGGEMFTH--LYQRDNFSEDEVRFYSGEIILA-LEH 120 (332)
T ss_pred --HHHHHHHHHCC----CCCCE--EEEEEEEEECCEEEEEEECCCCCCHHHH--HHHCCCCCHHHHHHHHHHHHHH-HHH
T ss_conf --99999999626----89977--8999999879989999967799989999--9864999999999999999999-999
Q ss_pred HHHCCEECCCCCCCEEEEECCCCEEEEECCHHEEC
Q ss_conf 97448661787862289802895357434031216
Q gi|254780623|r 278 TLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRL 312 (517)
Q Consensus 278 i~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l 312 (517)
T Consensus 121 LH~~gIiHRDlKPeNILl~~~g~ikL~DFGlak~~ 155 (332)
T cd05614 121 LHKLGIVYRDIKLENILLDSEGHVVLTDFGLSKEF 155 (332)
T ss_pred HHHCCCEECCCCHHHEEECCCCCEEEECCHHHHHH
T ss_conf 98788652567667700358998896024013655