HHsearch alignment for GI: 254780623 and conserved domain: cd06614
>cd06614 STKc_PAK Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I
Probab=98.89 E-value=6.8e-09 Score=88.08 Aligned_cols=161 Identities=17% Similarity=0.202 Sum_probs=95.7
Q ss_pred HHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 9998754047-889999998676667788886555502128887236876403104688777788999875321146854
Q gi|254780623|r 104 ARLSVASALK-APIEELYCEFDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPS 182 (517)
Q Consensus 104 v~~~ie~elg-~~~~~~F~~fdePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~ 182 (517)
T Consensus 4 ~~~~~~~~~~~~d~~~~Y~i-~~~iG~G~fg~Vy~a~~~~--tg~~vAiK~i~~~~----------------------~- 57 (287)
T cd06614 4 LKAALKDIVSEGDPRELYDN-LEKIGEGASGEVYTATDRA--TGKEVAIKKMRLRK----------------------Q- 57 (287)
T ss_pred HHHHHHHHCCCCCHHHCEEE-EEEEECCCCEEEEEEEECC--CCCEEEEEEEECCC----------------------C-
T ss_conf 99999987479994156597-4798038685999999999--99899999987067----------------------4-
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHC
Q ss_conf 3346917999999988788865599998898720244677664300001022178--33530024786324267733200
Q gi|254780623|r 183 MRRLCFSAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACG 260 (517)
Q Consensus 183 ~~~~~~~~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~ 260 (517)
T Consensus 58 -------~----~~~------~~~~Ei~il~~l~H-----pn--IV~l~~~~~~~~~~~ivmEy~~gG~L~~~i~~~~~~ 113 (287)
T cd06614 58 -------P----KKE------LIINEILIMKECKH-----PN--IVNYYDSYLVGDELWVVMEYMDGGSLTDIITQTFVR 113 (287)
T ss_pred -------H----HHH------HHHHHHHHHHHCCC-----CC--CCCEEEEEEECCEEEEEEECCCCCCHHHHHHHCCCC
T ss_conf -------5----799------99999999987799-----99--991999999899999999688899289999866899
Q ss_pred CCH---HHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf 225---6899999999999897448661787862289802895357434031216989
Q gi|254780623|r 261 HDL---ERLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517)
Q Consensus 261 ~d~---~~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517)
T Consensus 114 l~e~~~~~i~~qil~a-L~ylH~~~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~ 170 (287)
T cd06614 114 MNESQIAYVCREVLQG-LEYLHSQNVIHRDIKSDNILLSKDGSVKLADFGFAAQLTKE 170 (287)
T ss_pred CCHHHHHHHHHHHHHH-HHHHHHCCEECCCCCHHHEEECCCCCEEEECCCCCEECCCC
T ss_conf 8999999999999999-99999889440217679878989999999617775576688