HHsearch alignment for GI: 254780623 and conserved domain: cd06616

>cd06616 PKc_MKK4 Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates the downstream targets, c-Jun N-terminal kinase (JNK) and p38 MAPK, on specif
Probab=98.45  E-value=9e-07  Score=71.65  Aligned_cols=145  Identities=20%  Similarity=0.238  Sum_probs=80.3

Q ss_pred             HHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             867--666778888655550212888723687640310468877778899987532114685433469179999999887
Q gi|254780623|r  122 EFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVT  199 (517)
Q Consensus       122 ~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l  199 (517)
T Consensus         5 d~~~l~~lG~G~fg~V~~~~~~~--~~~~~AiK~i~~~~~~~---~------------------------------~~~~   49 (288)
T cd06616           5 DLKDLGEIGRGAFGTVNKMLHKP--SGTIMAVKRIRSTVDEK---E------------------------------QKRL   49 (288)
T ss_pred             HCEECCEEECCCCEEEEEEEECC--CCCEEEEEEECCCCCHH---H------------------------------HHHH
T ss_conf             98883286138785999999889--99699999988014918---9------------------------------9999


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHH--CCCCEEEEECCCCCCCCHHHHH---HHHCCCHHH----HHHHH
Q ss_conf             88865599998898720244677664300001022--1783353002478632426773---320022568----99999
Q gi|254780623|r  200 KMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNR--TERDVITMEWIDGVKISDTEKL---RACGHDLER----LSVTL  270 (517)
Q Consensus       200 ~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~--st~~VLvmE~i~G~~i~d~~~l---~~~~~d~~~----la~~l  270 (517)
T Consensus        50 ------~~e~~~l~~~~----~hpnI--v~~~~~~~~~~~~~ivme~~~~~-l~~~~~~~~~~~~~~~~e~~~~~~~~qi  116 (288)
T cd06616          50 ------LMDLDVVMRSS----DCPYI--VKFYGALFREGDCWICMELMDIS-LDKFYKYVYEVLKSVIPEEILGKIAVAT  116 (288)
T ss_pred             ------HHHHHHHHHHC----CCCCE--EEEEEEEEECCEEEEEEEECCCC-HHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf             ------99999999836----99988--88988998789179999982898-8999999987316899999999999999


Q ss_pred             HHHHHHHHHHC-CEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             99999989744-8661787862289802895357434031216989
Q gi|254780623|r  271 VQSFLLHTLRD-GFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       271 ~~~~~~qi~~~-GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
T Consensus       117 ~~al~-ylH~~~~IiHRDlKp~NILl~~~~~iKl~DFGla~~l~~~  161 (288)
T cd06616         117 VKALN-YLKEELKIIHRDVKPSNILLDRNGNIKLCDFGISGQLVDS  161 (288)
T ss_pred             HHHHH-HHHHCCCEECCCCCHHHEEECCCCCEEEEECCCCCCCCCC
T ss_conf             99999-9987289841667601132889997899968885435777