HHsearch alignment for GI: 254780623 and conserved domain: cd06623

>cd06623 PKc_MAPKK_plant_like Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include MAPKKs from plants, kinetoplastids, alveolates, and mycetozoa. The MAPKK, LmxPK4, from Leishmania m
Probab=98.89  E-value=2.2e-09  Score=91.96  Aligned_cols=141  Identities=18%  Similarity=0.271  Sum_probs=90.0

Q ss_pred             HHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             867--666778888655550212888723687640310468877778899987532114685433469179999999887
Q gi|254780623|r  122 EFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVT  199 (517)
Q Consensus       122 ~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l  199 (517)
T Consensus         2 d~~~~~~iG~G~fg~Vy~~~~~~--~~~~vAvK~i~~~~~---------------------------------~~~~~--   44 (264)
T cd06623           2 DLERVKVLGQGSSGVVYKVRHKP--TGKIYALKKIHVDGD---------------------------------EEFRK--   44 (264)
T ss_pred             CCEEEEEEECCCCEEEEEEEECC--CCCEEEEEEECCCCC---------------------------------HHHHH--
T ss_conf             97385898317893999999989--998999999821469---------------------------------78999--


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf             88865599998898720244677664300001022178335300247863242677332002256899999999999897
Q gi|254780623|r  200 KMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTL  279 (517)
Q Consensus       200 ~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~  279 (517)
T Consensus        45 ----~~~~E~~il~~l~H----pnIV~~~~~~~~-~~~~~lvmEy~~~G~L~~~i--~~~~----~~~e~~~~~~~~qi~  109 (264)
T cd06623          45 ----QLLRELKTLRSCES----PYVVKCYGAFYK-EGEISIVLEYMDGGSLADLL--KKVG----KIPEPVLAYIARQIL  109 (264)
T ss_pred             ----HHHHHHHHHHHCCC----CCCCEEEEEEEE-CCEEEEEEECCCCCCHHHHH--HHCC----CCCHHHHHHHHHHHH
T ss_conf             ----99999999986799----988829999988-99999999789998499999--7348----989999999999999


Q ss_pred             -------H-CCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             -------4-4866178786228980289535743403121698
Q gi|254780623|r  280 -------R-DGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       280 -------~-~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
T Consensus       110 ~gl~yLH~~~~IiHRDlKp~NILl~~~~~iKl~DFG~a~~~~~  152 (264)
T cd06623         110 KGLDYLHTKRHIIHRDIKPSNLLINSKGEVKIADFGISKVLEN  152 (264)
T ss_pred             HHHHHHHHCCCEECCCCCHHHEEECCCCCEEEECCCCCEECCC
T ss_conf             9999998708988044788996988999999921878858678