HHsearch alignment for GI: 254780623 and conserved domain: cd06631
>cd06631 STKc_YSK4 Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.
Probab=98.54 E-value=5.2e-08 Score=81.23 Aligned_cols=144 Identities=17% Similarity=0.197 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517)
Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517)
T Consensus 6 ~~lG~G~fg~V~~~~~~---~g~~vAiK~v~~~~~---------------------------~~~~~~~-------~~~~ 48 (265)
T cd06631 6 EVLGKGAYGTVYCGLTN---QGQLIAVKQVELDTS---------------------------NVLAAEK-------EYEK 48 (265)
T ss_pred CEEECCCCCEEEEEEEC---CCCEEEEEEEEECCC---------------------------CHHHHHH-------HHHH
T ss_conf 48801789199999958---999999999981553---------------------------2145599-------9999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHH----HHHHHHHHHHHHHHHH
Q ss_conf 599998898720244677664300001022178335300247863242677332002256----8999999999998974
Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLE----RLSVTLVQSFLLHTLR 280 (517)
Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~----~la~~l~~~~~~qi~~ 280 (517)
T Consensus 49 ~~~Ei~il~~l~H----pniv~~~~~~~~-~~~~~ivmEy~~gg~L~~~--l~~~~~~~e~~~~~~~~qi~~gl-~yLH~ 120 (265)
T cd06631 49 LQEEVDLLKSLKH----VNIVQYLGTCLD-DNTISIFMEFVPGGSISSI--LNRFGPLPEPVFCKYTKQILDGV-AYLHN 120 (265)
T ss_pred HHHHHHHHHHCCC----CCEEEEEEEEEE-CCEEEEEEECCCCCCHHHH--HHHCCCCCHHHHHHHHHHHHHHH-HHHHH
T ss_conf 9999999986899----997269999988-9989999991598948999--98649999999999999999999-99998
Q ss_pred CCEECCCCCCCEEEEECCCCEEEEECCHHEECC
Q ss_conf 486617878622898028953574340312169
Q gi|254780623|r 281 DGFFHADLHPGNLFVDSKGYIVAVDMGITGRLS 313 (517)
Q Consensus 281 ~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~ 313 (517)
T Consensus 121 ~giiHRDlKp~NiLl~~~~~vKl~DFG~ak~~~ 153 (265)
T cd06631 121 NCVVHRDIKGNNVMLMPNGIIKLIDFGCARRLA 153 (265)
T ss_pred CCCCCCCCCHHHEEECCCCCEEEECCCCCCCCC
T ss_conf 888313278899238899989990375761444