HHsearch alignment for GI: 254780623 and conserved domain: cd06637
>cd06637 STKc_TNIK Serine/threonine kinases (STKs),Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activates the c-Jun N-terminal kinase (JNK) pathway and plays a role in regulating the actin cytos
Probab=98.77 E-value=8e-09 Score=87.54 Aligned_cols=141 Identities=13% Similarity=0.191 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517)
Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517)
T Consensus 12 ~~IG~G~fg~Vy~a~~~~--~~~~~AiK~i~~~~~---------------------------~-~---~----------~ 48 (272)
T cd06637 12 ELVGNGTYGQVYKGRHVK--TGQLAAIKVMDVTGD---------------------------E-E---E----------E 48 (272)
T ss_pred EEEECCCCEEEEEEEECC--CCCEEEEEEECCCCC---------------------------C-H---H----------H
T ss_conf 799228782999999989--997999999866878---------------------------6-9---9----------9
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHH--------CCCCEEEEECCCCCCCCHHHHHHH-HCCCHH---HHHHHHHH
Q ss_conf 599998898720244677664300001022--------178335300247863242677332-002256---89999999
Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNR--------TERDVITMEWIDGVKISDTEKLRA-CGHDLE---RLSVTLVQ 272 (517)
Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~--------st~~VLvmE~i~G~~i~d~~~l~~-~~~d~~---~la~~l~~ 272 (517)
T Consensus 49 ~~~E~~~l~~~~~----h~ni--~~~~~~~~~~~~~~~~~~~~ivmE~~~~G~L~~~l~~~~~~~~~e~~i~~i~~qi~~ 122 (272)
T cd06637 49 IKQEINMLKKYSH----HRNI--ATYYGAFIKKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILR 122 (272)
T ss_pred HHHHHHHHHHCCC----CCCE--EEEEEEEEECCCCCCCCEEEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHH
T ss_conf 9999999985659----9807--489999996578887888999995889997999998716899999999999999999
Q ss_pred HHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf 9999897448661787862289802895357434031216989
Q gi|254780623|r 273 SFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517)
Q Consensus 273 ~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517)
T Consensus 123 g-l~ylH~~~iiHRDlKp~NILl~~~~~vKi~DFGls~~~~~~ 164 (272)
T cd06637 123 G-LSHLHQHKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRT 164 (272)
T ss_pred H-HHHHHHCCCCCCCCCHHHEEECCCCCEEEEECCCCEECCCC
T ss_conf 9-99999899156746789989879998999858886587667