HHsearch alignment for GI: 254780623 and conserved domain: cd06658

>cd06658 STKc_PAK5 Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly expressed in the brain. It is not required for viability, but together with PAK6, it is
Probab=98.86  E-value=1.5e-08  Score=85.44  Aligned_cols=163  Identities=19%  Similarity=0.249  Sum_probs=100.1

Q ss_pred             CHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             98999998754047-88999999867666778888655550212888723687640310468877778899987532114
Q gi|254780623|r  100 PTNTARLSVASALK-APIEELYCEFDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEK  178 (517)
Q Consensus       100 ~~~~v~~~ie~elg-~~~~~~F~~fdePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~  178 (517)
T Consensus         3 ~~~~~~~~~~~~~~~gd~~~~~~~l~-~IG~G~fg~V~~a~~~~--tg~~vAiK~i~~--------------------~~   59 (292)
T cd06658           3 SHEQFRAALQLVVSPGDPREYLDSFI-KIGEGSTGIVCIATEKH--TGKQVAVKKMDL--------------------RK   59 (292)
T ss_pred             CHHHHHHHHHHHCCCCCHHHHCCCCE-EECCCCCCEEEEEEECC--CCCEEEEEEEEC--------------------CC
T ss_conf             77999999983549999489674077-96227781999999899--998999999851--------------------66


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHHHH
Q ss_conf             685433469179999999887888655999988987202446776643000010221783--353002478632426773
Q gi|254780623|r  179 LLPSMRRLCFSAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTEKL  256 (517)
Q Consensus       179 ~~~~~~~~~~~~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~l  256 (517)
T Consensus        60 -------~~-------~~~~------~~~Ei~il~~l~H-----pnI--V~l~~~~~~~~~~yiVmE~~~gG~L~~~i--  110 (292)
T cd06658          60 -------QQ-------RREL------LFNEVVIMRDYHH-----ENV--VDMYNSYLVGDELWVVMEFLEGGALTDIV--  110 (292)
T ss_pred             -------CC-------HHHH------HHHHHHHHHHCCC-----CCC--CEEEEEEEECCEEEEEEECCCCCCHHHHH--
T ss_conf             -------32-------3999------9999999986799-----898--91999999899999999898999177898--


Q ss_pred             HHHCCCHHHH---HHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             3200225689---9999999999897448661787862289802895357434031216989
Q gi|254780623|r  257 RACGHDLERL---SVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       257 ~~~~~d~~~l---a~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
T Consensus       111 ~~~~l~e~~~~~i~~qil~a-L~yLH~~~IiHRDlKpeNILl~~~g~iKL~DFGla~~~~~~  171 (292)
T cd06658         111 THTRMNEEQIATVCLSVLRA-LSYLHNQGVIHRDIKSDSILLTSDGRIKLSDFGFCAQVSKE  171 (292)
T ss_pred             HCCCCCHHHHHHHHHHHHHH-HHHHHHCCEEECCCCHHHEEECCCCCEEEEECCCCEECCCC
T ss_conf             72899999999999999999-99999789353637715367868998999726275565777