HHsearch alignment for GI: 254780623 and conserved domain: cd07833

>cd07833 STKc_CDKL The catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learn
Probab=98.64  E-value=5.1e-08  Score=81.31  Aligned_cols=142  Identities=14%  Similarity=0.201  Sum_probs=84.4

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
T Consensus         7 ~~iG~G~fg~V~~~~~~~--~~~~vAiK~~~~~~~---------------------------~-----~~~~~~~-----   47 (288)
T cd07833           7 GVVGEGAYGVVLKCRNKA--TGEIVAIKKFKESED---------------------------D-----EDVKKTA-----   47 (288)
T ss_pred             EEEECCCCEEEEEEEECC--CCCEEEEEEECCCCC---------------------------C-----HHHHHHH-----
T ss_conf             397416086999999889--998999999872337---------------------------8-----8999999-----


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHCCCH---HHHHHHHHHHHHHHHH
Q ss_conf             599998898720244677664300001022178--33530024786324267733200225---6899999999999897
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACGHDL---ERLSVTLVQSFLLHTL  279 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~~d~---~~la~~l~~~~~~qi~  279 (517)
T Consensus        48 -~~Ei~il~~l~-----Hpn--Iv~~~~~f~~~~~~~lVmE~~~~~l~~~~~~~-~~~l~~~~i~~i~~qll~aL-~yLH  117 (288)
T cd07833          48 -LREVKVLRQLR-----HEN--IVNLKEAFRRKGRLYLVFEYVERTLLELLEAS-PGGLPPDAVRSYIWQLLQAI-AYCH  117 (288)
T ss_pred             -HHHHHHHHHCC-----CCC--EEEEEEEEEECCEEEEEEECCCCCHHHHHHHC-CCCCCHHHHHHHHHHHHHHH-HHHH
T ss_conf             -99999998679-----999--85598998389999999937799759999976-79989999999999999999-9999


Q ss_pred             HCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             448661787862289802895357434031216989
Q gi|254780623|r  280 RDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       280 ~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
T Consensus       118 ~~~iiHRDiKpeNILl~~~~~iKl~DFG~a~~~~~~  153 (288)
T cd07833         118 SHNIIHRDIKPENILVSESGVLKLCDFGFARALRAR  153 (288)
T ss_pred             HCCCCCCCCCHHHEEECCCCCEEEEECCCCEECCCC
T ss_conf             888461667788878888998898005554002468