HHsearch alignment for GI: 254780623 and conserved domain: cd07839
>cd07839 STKc_CDK5 The catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5 subfamily. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiatio
Probab=98.70 E-value=1.9e-08 Score=84.59 Aligned_cols=138 Identities=17% Similarity=0.290 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517)
Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517)
T Consensus 6 ~~iG~G~fg~V~~~~~~~--t~~~vAiK~i~~~~~~--------------------------------~~~~~~~~---- 47 (284)
T cd07839 6 EKIGEGTYGTVFKAKNRE--THEIVALKRVRLDDDD--------------------------------EGVPSSAL---- 47 (284)
T ss_pred EEEECCCCEEEEEEEECC--CCCEEEEEEEECCCCC--------------------------------HHHHHHHH----
T ss_conf 482047283999999889--9979999998303464--------------------------------67799999----
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHH--CCCH---HHHHHHHHHHHHHH
Q ss_conf 599998898720244677664300001022178--3353002478632426773320--0225---68999999999998
Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRAC--GHDL---ERLSVTLVQSFLLH 277 (517)
Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~--~~d~---~~la~~l~~~~~~q 277 (517)
T Consensus 48 --~Ei~il~~l~h-----pn--Iv~~~~~~~~~~~~~ivmE~~~~-~l~~~--~~~~~~~~~~~~~~~~~~qil~gl-~y 114 (284)
T cd07839 48 --REICLLKELKH-----KN--IVRLYDVLHSDKKLTLVFEYCDQ-DLKKY--FDSCNGDIDPEIVKSFMFQLLKGL-AF 114 (284)
T ss_pred --HHHHHHHHCCC-----CC--CCCEEEEECCCCEEEEEEECCCC-CHHHH--HHHHCCCCCHHHHHHHHHHHHHHH-HH
T ss_conf --99999986799-----99--72021125009979999960797-78999--997279999999999999999999-99
Q ss_pred HHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECC
Q ss_conf 974486617878622898028953574340312169
Q gi|254780623|r 278 TLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLS 313 (517)
Q Consensus 278 i~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~ 313 (517)
T Consensus 115 lH~~~IiHRDiKpeNILl~~~~~vKL~DFGla~~~~ 150 (284)
T cd07839 115 CHSHNVLHRDLKPQNLLINKNGELKLADFGLARAFG 150 (284)
T ss_pred HHHCCCCCCCCCCCCEEECCCCCEEEEECCCCCCCC
T ss_conf 986985712177302688899999995517663169