HHsearch alignment for GI: 254780623 and conserved domain: cd07841

>cd07841 STKc_CDK7 The catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7 subfamily. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates
Probab=98.87  E-value=7.1e-09  Score=87.94  Aligned_cols=140  Identities=21%  Similarity=0.276  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
T Consensus         6 ~~iG~G~fg~V~~~~~~~--~~~~vAiK~i~~~~~~~~~~~-----------------------------~~~~~-----   49 (298)
T cd07841           6 KKLGEGTYAVVYKARDKE--TGRIVAIKKIKLGERKEAKDG-----------------------------INFTA-----   49 (298)
T ss_pred             EEEECCCCEEEEEEEECC--CCCEEEEEEEEHHHHHHHHHH-----------------------------HHHHH-----
T ss_conf             495327283999999899--998999999973143456677-----------------------------67899-----


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCC--CCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH---
Q ss_conf             59999889872024467766430000102217--8335300247863242677332002256899999999999897---
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTE--RDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTL---  279 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st--~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~---  279 (517)
T Consensus        50 -~rEi~~l~~l~h-----pn--Iv~~~~~~~~~~~~~iVmEy~~g~-L~~~--l~~~~---~~l~e~~~~~~~~Qil~al  115 (298)
T cd07841          50 -LREIKLLQELKH-----PN--IIGLLDVFGHKSNINLVFEFMETD-LEKV--IKDKS---IVLTPADIKSYMLMTLRGL  115 (298)
T ss_pred             -HHHHHHHHHCCC-----CC--CCEEEEEEEECCEEEEEEECCCCC-HHHH--HHHCC---CCCCHHHHHHHHHHHHHHH
T ss_conf             -999999997599-----99--664999998899999999578998-8999--87238---8999999999999999999


Q ss_pred             ----HCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf             ----44866178786228980289535743403121698
Q gi|254780623|r  280 ----RDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK  314 (517)
Q Consensus       280 ----~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~  314 (517)
T Consensus       116 ~ylH~~~iiHRDIKPeNILl~~~g~vKl~DFG~a~~~~~  154 (298)
T cd07841         116 EYLHSNWILHRDLKPNNLLIASDGVLKLADFGLARSFGS  154 (298)
T ss_pred             HHHHHCCEEECCCCHHHEEECCCCCEEEEECCEEEECCC
T ss_conf             999978924031577885687899989836332356578