HHsearch alignment for GI: 254780623 and conserved domain: cd07848

>cd07848 STKc_CDKL5 The catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5 subfamily. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations a
Probab=98.69  E-value=3.7e-08  Score=82.43  Aligned_cols=144  Identities=15%  Similarity=0.241  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
T Consensus         7 ~~iG~G~fg~V~~~~~~~--t~~~vAiK~i~~~~~--------------------------------~~~~~~~~~rEi-   51 (287)
T cd07848           7 GVVGEGAYGVVLKCRHKE--TKEIVAIKKFKDSEE--------------------------------NEEVKETTLREL-   51 (287)
T ss_pred             EEEECCCCEEEEEEEECC--CCCEEEEEEECCCCC--------------------------------CHHHHHHHHHHH-
T ss_conf             796417486999999889--998999999874005--------------------------------979999999999-


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHH---HHHHHHHHHHHHHHHHC
Q ss_conf             599998898720244677664300001022178335300247863242677332002256---89999999999989744
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLE---RLSVTLVQSFLLHTLRD  281 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~---~la~~l~~~~~~qi~~~  281 (517)
T Consensus        52 -----~il~~l~h----~nIv~l~~~f~-~~~~~~lVmE~~~~~ll~~~~~~~-~~~~~~~i~~~~~qil~a-l~ylH~~  119 (287)
T cd07848          52 -----KMLRTLKQ----ENIVELKEAFR-RRGKLYLVFEYVEKNMLELLEEMP-NGVPPEKVRSYIYQLIKA-IHWCHKN  119 (287)
T ss_pred             -----HHHHHCCC----CCCCEEEEEEE-ECCEEEEEEECCCCCHHHHHHHCC-CCCCHHHHHHHHHHHHHH-HHHHHHC
T ss_conf             -----99986799----89873989999-899999999758998199998644-899999999999999999-9999988


Q ss_pred             CEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             8661787862289802895357434031216989
Q gi|254780623|r  282 GFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       282 GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
T Consensus       120 ~IiHRDiKPeNILl~~~~~iKl~DFG~a~~~~~~  153 (287)
T cd07848         120 DIVHRDIKPENLLISHNDVLKLCDFGFARNLSEG  153 (287)
T ss_pred             CCCCCCCCHHHEEECCCCCEEEECCCCCEECCCC
T ss_conf             9240567789978888998898137644464677