HHsearch alignment for GI: 254780623 and conserved domain: cd07848
>cd07848 STKc_CDKL5 The catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5 subfamily. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations a
Probab=98.69 E-value=3.7e-08 Score=82.43 Aligned_cols=144 Identities=15% Similarity=0.241 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r 125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD 204 (517)
Q Consensus 125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD 204 (517)
T Consensus 7 ~~iG~G~fg~V~~~~~~~--t~~~vAiK~i~~~~~--------------------------------~~~~~~~~~rEi- 51 (287)
T cd07848 7 GVVGEGAYGVVLKCRHKE--TKEIVAIKKFKDSEE--------------------------------NEEVKETTLREL- 51 (287)
T ss_pred EEEECCCCEEEEEEEECC--CCCEEEEEEECCCCC--------------------------------CHHHHHHHHHHH-
T ss_conf 796417486999999889--998999999874005--------------------------------979999999999-
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHH---HHHHHHHHHHHHHHHHC
Q ss_conf 599998898720244677664300001022178335300247863242677332002256---89999999999989744
Q gi|254780623|r 205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLE---RLSVTLVQSFLLHTLRD 281 (517)
Q Consensus 205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~---~la~~l~~~~~~qi~~~ 281 (517)
T Consensus 52 -----~il~~l~h----~nIv~l~~~f~-~~~~~~lVmE~~~~~ll~~~~~~~-~~~~~~~i~~~~~qil~a-l~ylH~~ 119 (287)
T cd07848 52 -----KMLRTLKQ----ENIVELKEAFR-RRGKLYLVFEYVEKNMLELLEEMP-NGVPPEKVRSYIYQLIKA-IHWCHKN 119 (287)
T ss_pred -----HHHHHCCC----CCCCEEEEEEE-ECCEEEEEEECCCCCHHHHHHHCC-CCCCHHHHHHHHHHHHHH-HHHHHHC
T ss_conf -----99986799----89873989999-899999999758998199998644-899999999999999999-9999988
Q ss_pred CEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf 8661787862289802895357434031216989
Q gi|254780623|r 282 GFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517)
Q Consensus 282 GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517)
T Consensus 120 ~IiHRDiKPeNILl~~~~~iKl~DFG~a~~~~~~ 153 (287)
T cd07848 120 DIVHRDIKPENLLISHNDVLKLCDFGFARNLSEG 153 (287)
T ss_pred CCCCCCCCHHHEEECCCCCEEEECCCCCEECCCC
T ss_conf 9240567789978888998898137644464677