HHsearch alignment for GI: 254780623 and conserved domain: cd07865
>cd07865 STKc_CDK9 The catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9 subfamily. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participa
Probab=98.65 E-value=8.9e-08 Score=79.43 Aligned_cols=142 Identities=13% Similarity=0.193 Sum_probs=81.5
Q ss_pred HHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 867--666778888655550212888723687640310468877778899987532114685433469179999999887
Q gi|254780623|r 122 EFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVT 199 (517)
Q Consensus 122 ~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l 199 (517)
T Consensus 13 ~Y~~~~~IG~G~fg~V~~a~~~~--t~~~vAiK~i~~~--------------------~~~~------------~~~~~~ 58 (310)
T cd07865 13 KYEKLAKIGQGTFGEVFKARHKK--TKQIVALKKVLME--------------------NEKE------------GFPITA 58 (310)
T ss_pred CEEEEEEEECCCCCEEEEEEECC--CCCEEEEEEEECC--------------------CCCH------------HHHHHH
T ss_conf 87776697337284999999999--9979999998410--------------------0432------------668999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHC-------CCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 8886559999889872024467766430000-------102217833530024786324267733200225689999999
Q gi|254780623|r 200 KMEMDLRLEAAAFSEMAENTVKDQGFRVPKI-------DWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQ 272 (517)
Q Consensus 200 ~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~v-------y~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~ 272 (517)
T Consensus 59 ------~rEi~il~~l~H----~niv~~~~~~~~~~~~~~~~~~~~~lv~E~~~~~l~-~~--~~~~~---~~~~~~~i~ 122 (310)
T cd07865 59 ------LREIKILQLLKH----ENVVNLIEICRTKATPYNRFKGSFYLVFEFCEHDLA-GL--LSNKN---VKFTLSEIK 122 (310)
T ss_pred ------HHHHHHHHHCCC----CCCCEEEEEEEECCCCCCCCCCEEEEEEECCCCCHH-HH--HHHCC---CCCCHHHHH
T ss_conf ------999999997479----981406889973364555668759999966899768-88--86346---898999999
Q ss_pred HHHHHH-------HHCCEECCCCCCCEEEEECCCCEEEEECCHHEECC
Q ss_conf 999989-------74486617878622898028953574340312169
Q gi|254780623|r 273 SFLLHT-------LRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLS 313 (517)
Q Consensus 273 ~~~~qi-------~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~ 313 (517)
T Consensus 123 ~i~~Qil~aL~yLH~~gIiHRDlKPeNILl~~~~~vKl~DFGla~~~~ 170 (310)
T cd07865 123 KVMKQLLNGLYYIHRNKILHRDMKAANILITKDGILKLADFGLARAFS 170 (310)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCHHHEEECCCCCEEEECCCCCEECC
T ss_conf 999999999999987877516787899688788988982166441323