HHsearch alignment for GI: 254780623 and conserved domain: cd07871

>cd07871 STKc_PCTAIRE3 The catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase. Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical fila
Probab=98.58  E-value=2.8e-07  Score=75.54  Aligned_cols=136  Identities=19%  Similarity=0.278  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66677888865555021288872368764031046887777889998753211468543346917999999988788865
Q gi|254780623|r  125 DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMD  204 (517)
Q Consensus       125 ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD  204 (517)
T Consensus        11 ~~iG~G~fg~V~~~~~~~--t~~~vAiK~i~~~~~---------------------~-~-----------~~------~~   49 (288)
T cd07871          11 DKLGEGTYATVFKGRSKL--TENLVALKEIRLEHE---------------------E-G-----------AP------CT   49 (288)
T ss_pred             EEEECCCCEEEEEEEECC--CCCEEEEEEEEHHHC---------------------C-C-----------HH------HH
T ss_conf             187048692999999889--998999999834322---------------------3-0-----------38------99


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCC--CEEEEECCCCCCCCHHHHHHHHC--CCH---HHHHHHHHHHHHHH
Q ss_conf             599998898720244677664300001022178--33530024786324267733200--225---68999999999998
Q gi|254780623|r  205 LRLEAAAFSEMAENTVKDQGFRVPKIDWNRTER--DVITMEWIDGVKISDTEKLRACG--HDL---ERLSVTLVQSFLLH  277 (517)
Q Consensus       205 ~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~--~VLvmE~i~G~~i~d~~~l~~~~--~d~---~~la~~l~~~~~~q  277 (517)
T Consensus        50 ~~~Ei~il~~l~H-----pn--Iv~l~~~~~~~~~~~lv~E~~~~-~l~~~--l~~~~~~~~~~~~~~~~~qil~a-l~y  118 (288)
T cd07871          50 AIREVSLLKNLKH-----AN--IVTLHDIIHTERCLTLVFEYLDS-DLKQY--LDNCGNLMSMHNVKIFMFQLLRG-LSY  118 (288)
T ss_pred             HHHHHHHHHHCCC-----CC--EEEEEEEECCCCEEEEEEECCCC-HHHHH--HHHCCCCCCHHHHHHHHHHHHHH-HHH
T ss_conf             9999999986789-----99--72241113479868999966760-59999--98648989999999999999999-999


Q ss_pred             HHHCCEECCCCCCCEEEEECCCCEEEEECCHHEEC
Q ss_conf             97448661787862289802895357434031216
Q gi|254780623|r  278 TLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRL  312 (517)
Q Consensus       278 i~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l  312 (517)
T Consensus       119 lH~~~IiHRDiKPeNILi~~~~~vKl~DFGla~~~  153 (288)
T cd07871         119 CHKRKILHRDLKPQNLLINEKGELKLADFGLARAK  153 (288)
T ss_pred             HHHCCEEEEECCCHHEEECCCCCEEEEEECCCCCC
T ss_conf             98789277124502147879997899173555016