HHsearch alignment for GI: 254780623 and conserved domain: cd07874
>cd07874 STKc_JNK3 The catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, s
Probab=98.55 E-value=8.7e-08 Score=79.51 Aligned_cols=152 Identities=19% Similarity=0.243 Sum_probs=83.0
Q ss_pred HHHHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
Q ss_conf 999867--666778888655550212888723687640310468877778899987532114685433469179999999
Q gi|254780623|r 119 LYCEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALE 196 (517)
Q Consensus 119 ~F~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~ 196 (517)
T Consensus 15 v~~RY~i~~~LG~G~fG~V~~a~d~--~t~~~vAiK~i~~~~~~~~--------------------------------~~ 60 (355)
T cd07874 15 VLKRYQNLKPIGSGAQGIVCAAYDA--VLDRNVAIKKLSRPFQNQT--------------------------------HA 60 (355)
T ss_pred HHHCEEEEEEEECCCCEEEEEEEEC--CCCCEEEEEEECHHHCCHH--------------------------------HH
T ss_conf 2016188169521618499999988--9998999999892454979--------------------------------99
Q ss_pred HHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHH---HHHHHHH
Q ss_conf 887888655999988987202-446776643000010221783353002478632426773320022568---9999999
Q gi|254780623|r 197 QVTKMEMDLRLEAAAFSEMAE-NTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLER---LSVTLVQ 272 (517)
Q Consensus 197 ~~l~~ElD~~~Ea~n~~~~~~-~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~---la~~l~~ 272 (517)
T Consensus 61 ~~~~------rEi~il~~l~hpnIV~~~~~f~~~~~~~~~~~~yivmE~~~~~l-~~~--~-~~~l~~~~i~~i~~qil~ 130 (355)
T cd07874 61 KRAY------RELVLMKCVNHKNIISLLNVFTPQKSLEEFQDVYLVMELMDANL-CQV--I-QMELDHERMSYLLYQMLC 130 (355)
T ss_pred HHHH------HHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCEEEEEEECCCCH-HHH--H-HHCCCHHHHHHHHHHHHH
T ss_conf 9999------99999986799698919899841774211561799997059988-999--8-734999999999999999
Q ss_pred HHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf 9999897448661787862289802895357434031216989
Q gi|254780623|r 273 SFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR 315 (517)
Q Consensus 273 ~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~ 315 (517)
T Consensus 131 g-L~ylH~~gIiHRDLKPeNILl~~~~~vKl~DFGlA~~~~~~ 172 (355)
T cd07874 131 G-IKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTS 172 (355)
T ss_pred H-HHHHHHCCCEECCCCHHHEEECCCCCEECCCCCCCCCCCCC
T ss_conf 9-99998798253248778867868997401454402234787