HHsearch alignment for GI: 254780623 and conserved domain: cd07874

>cd07874 STKc_JNK3 The catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, s
Probab=98.55  E-value=8.7e-08  Score=79.51  Aligned_cols=152  Identities=19%  Similarity=0.243  Sum_probs=83.0

Q ss_pred             HHHHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
Q ss_conf             999867--666778888655550212888723687640310468877778899987532114685433469179999999
Q gi|254780623|r  119 LYCEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALE  196 (517)
Q Consensus       119 ~F~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~  196 (517)
T Consensus        15 v~~RY~i~~~LG~G~fG~V~~a~d~--~t~~~vAiK~i~~~~~~~~--------------------------------~~   60 (355)
T cd07874          15 VLKRYQNLKPIGSGAQGIVCAAYDA--VLDRNVAIKKLSRPFQNQT--------------------------------HA   60 (355)
T ss_pred             HHHCEEEEEEEECCCCEEEEEEEEC--CCCCEEEEEEECHHHCCHH--------------------------------HH
T ss_conf             2016188169521618499999988--9998999999892454979--------------------------------99


Q ss_pred             HHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHH---HHHHHHH
Q ss_conf             887888655999988987202-446776643000010221783353002478632426773320022568---9999999
Q gi|254780623|r  197 QVTKMEMDLRLEAAAFSEMAE-NTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLER---LSVTLVQ  272 (517)
Q Consensus       197 ~~l~~ElD~~~Ea~n~~~~~~-~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~---la~~l~~  272 (517)
T Consensus        61 ~~~~------rEi~il~~l~hpnIV~~~~~f~~~~~~~~~~~~yivmE~~~~~l-~~~--~-~~~l~~~~i~~i~~qil~  130 (355)
T cd07874          61 KRAY------RELVLMKCVNHKNIISLLNVFTPQKSLEEFQDVYLVMELMDANL-CQV--I-QMELDHERMSYLLYQMLC  130 (355)
T ss_pred             HHHH------HHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCEEEEEEECCCCH-HHH--H-HHCCCHHHHHHHHHHHHH
T ss_conf             9999------99999986799698919899841774211561799997059988-999--8-734999999999999999


Q ss_pred             HHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCHH
Q ss_conf             9999897448661787862289802895357434031216989
Q gi|254780623|r  273 SFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSKR  315 (517)
Q Consensus       273 ~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~  315 (517)
T Consensus       131 g-L~ylH~~gIiHRDLKPeNILl~~~~~vKl~DFGlA~~~~~~  172 (355)
T cd07874         131 G-IKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTS  172 (355)
T ss_pred             H-HHHHHHCCCEECCCCHHHEEECCCCCEECCCCCCCCCCCCC
T ss_conf             9-99998798253248778867868997401454402234787