HHsearch alignment for GI: 254780623 and conserved domain: cd07876
>cd07876 STKc_JNK2 The catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes
Probab=98.69 E-value=3.4e-08 Score=82.70 Aligned_cols=151 Identities=19% Similarity=0.219 Sum_probs=84.7
Q ss_pred HHHHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
Q ss_conf 999867--666778888655550212888723687640310468877778899987532114685433469179999999
Q gi|254780623|r 119 LYCEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALE 196 (517)
Q Consensus 119 ~F~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~ 196 (517)
T Consensus 19 vl~rY~i~~~IG~G~fG~V~~a~d~~--tg~~VAIK~i~~~~~~--------------------------------~~~~ 64 (359)
T cd07876 19 VLKRYQQLKPIGSGAQGIVCAAFDTV--LGINVAVKKLSRPFQN--------------------------------QTHA 64 (359)
T ss_pred HHHCEEEEEEEECCCCEEEEEEEECC--CCCEEEEEEECCHHCC--------------------------------HHHH
T ss_conf 13363881597215086999999889--9989999998910149--------------------------------7999
Q ss_pred HHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHH---HHHHHHHH
Q ss_conf 887888655999988987202-44677664300001022178335300247863242677332002256---89999999
Q gi|254780623|r 197 QVTKMEMDLRLEAAAFSEMAE-NTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLE---RLSVTLVQ 272 (517)
Q Consensus 197 ~~l~~ElD~~~Ea~n~~~~~~-~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~---~la~~l~~ 272 (517)
T Consensus 65 ~~~~------rEi~il~~l~HpnIv~l~~~f~~~~~~~~~~~~ylvmE~~~~~-L~~~i---~~~l~~~~~~~i~~qil~ 134 (359)
T cd07876 65 KRAY------RELVLLKCVNHKNIISLLNVFTPQKSLEEFQDVYLVMELMDAN-LCQVI---HMELDHERMSYLLYQMLC 134 (359)
T ss_pred HHHH------HHHHHHHHCCCCCCCCEEEEEECCCCCCCCCEEEEEEECCCCC-HHHHH---HCCCCHHHHHHHHHHHHH
T ss_conf 9999------9999998679969882899994167421266079999607998-89998---526999999999999999
Q ss_pred HHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf 999989744866178786228980289535743403121698
Q gi|254780623|r 273 SFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517)
Q Consensus 273 ~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517)
T Consensus 135 g-L~ylH~~gIiHRDIKP~NILl~~~g~iKL~DFGlAr~~~~ 175 (359)
T cd07876 135 G-IKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTACT 175 (359)
T ss_pred H-HHHHHHCCEEECCCCHHHEEECCCCCEEECCCCCCCCCCC
T ss_conf 9-9999868923057866876987899776235340301367