HHsearch alignment for GI: 254780623 and conserved domain: pfam06176
>pfam06176 WaaY Lipopolysaccharide core biosynthesis protein (WaaY). This family consists of several bacterial lipopolysaccharide core biosynthesis proteins (WaaY or RfaY). The waaY, waaQ, and waaP genes are located in the central operon of the waa (formerly rfa) locus on the chromosome of Escherichia coli. This locus contains genes whose products are involved in the assembly of the core region of the lipopolysaccharide molecule. WaaY is the enzyme that phosphorylates HepII in this system.
Probab=98.36 E-value=7.8e-07 Score=72.13 Aligned_cols=130 Identities=17% Similarity=0.273 Sum_probs=82.3
Q ss_pred CCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 87236876403104688777788999875321146854334691799999998878886559999889872024467766
Q gi|254780623|r 145 GYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQG 224 (517)
Q Consensus 145 ~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~ 224 (517)
T Consensus 53 ~~~kyIlK~~~~~~~-------~~eR~~~s~i----k-----------g~~y~~li~~~~~~~~eG~~------~~nd~y 104 (229)
T pfam06176 53 DYGKYVLKVFAPKVK-------RNERFLKSLV----K-----------GDYYENLIVQTDRVRSEGLT------SLNDFY 104 (229)
T ss_pred CCCEEEEECCCCCCC-------HHHHHHHHHH----C-----------CHHHHHHHHHHHHHHHCCCC------CCCCEE
T ss_conf 595589966752111-------2899999986----1-----------48999999999988761330------003200
Q ss_pred CCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECCCCEEEE
Q ss_conf 43000010221783353002478632426773320022568999999999998974486617878622898028953574
Q gi|254780623|r 225 FRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIVAV 304 (517)
Q Consensus 225 v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~d~~~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~l 304 (517)
T Consensus 105 l~aekk~~r~~~~~i~l~EYIEG~~l~~~~dI~e~------~~~~-Ik~~I~~LH~~g~~sgD~h~gNFI~-s~~~irII 176 (229)
T pfam06176 105 LLAERKTLNYAHTYIMLIEYIEGVELNDMPEISED------VKAK-IKQSIESLHQHGMVSGDPHRGNFIV-SKDGVRII 176 (229)
T ss_pred EEEEHHHCCEEEEEEEEEEEECCCCCCCCCCCCHH------HHHH-HHHHHHHHHHCCCCCCCCCCCCEEE-ECCCEEEE
T ss_conf 13121425601456666532257324664445666------7999-9999999997166358998765475-08977999
Q ss_pred ECCHHE
Q ss_conf 340312
Q gi|254780623|r 305 DMGITG 310 (517)
Q Consensus 305 DfG~vg 310 (517)
T Consensus 177 DlsgK~ 182 (229)
T pfam06176 177 DLSGKR 182 (229)
T ss_pred ECCCCC
T ss_conf 888851