HHsearch alignment for GI: 254780623 and conserved domain: pfam06293
>pfam06293 Kdo Lipopolysaccharide kinase (Kdo/WaaP) family. These lipopolysaccharide kinases are related to protein kinases pfam00069. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of S. enterica.
Probab=97.81 E-value=0.00012 Score=55.22 Aligned_cols=121 Identities=19% Similarity=0.182 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHH------CCCCEEEEECCCC-CCCCHHHHHHH-HCCC-HHHHHHHHH
Q ss_conf 8865599998898720244677664300001022------1783353002478-63242677332-0022-568999999
Q gi|254780623|r 201 MEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNR------TERDVITMEWIDG-VKISDTEKLRA-CGHD-LERLSVTLV 271 (517)
Q Consensus 201 ~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~------st~~VLvmE~i~G-~~i~d~~~l~~-~~~d-~~~la~~l~ 271 (517)
T Consensus 54 ~~~ra~rE~~~L~~L~~-----~Gipvp~pva~~~~~~~~~~~a~LITe~l~~~~~L~~~l~~~~~~~~~~~~~l~~~-v 127 (206)
T pfam06293 54 GRTRSFREFRLLRRLRE-----AGVPVPKPVAAGAVKVGGEYQADLLTERLEGAQDLVTWLAQWADPAEELRRALWRA-V 127 (206)
T ss_pred CCCCHHHHHHHHHHHHH-----CCCCCCCEEEEEEECCCCCEEEEEEHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHH-H
T ss_conf 88699999999999998-----59998876689998368717998864135684209999861344453678999999-9
Q ss_pred HHHHHHHHHCCEECCCCCCCEEEEECCC---CEEEEECCHHEECCH---HHHHHHHHHHHHH
Q ss_conf 9999989744866178786228980289---535743403121698---9999999766999
Q gi|254780623|r 272 QSFLLHTLRDGFFHADLHPGNLFVDSKG---YIVAVDMGITGRLSK---RERRFLAEILYGF 327 (517)
Q Consensus 272 ~~~~~qi~~~GfFHaDPHpGNi~v~~dg---~i~~lDfG~vg~l~~---~~r~~l~~l~~a~ 327 (517)
T Consensus 128 g~~i~~~H~~gi~H~DL~~~nIll~~~~~~~~~~LIDldr~~~r~~~~~~~~~dL~rL~rS~ 189 (206)
T pfam06293 128 GRLIARMHRAGVNHTDLNAHNILLDTGEGGFKVWLIDFDKCRRRLRGDRWREKDLARLKRSF 189 (206)
T ss_pred HHHHHHHHHCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 99999999876845899900089817998753999987667056887138898799999765