HHsearch alignment for GI: 254780623 and conserved domain: smart00090
>smart00090 RIO RIO-like kinase.
Probab=99.15 E-value=5.2e-10 Score=96.74 Aligned_cols=198 Identities=22% Similarity=0.286 Sum_probs=127.2
Q ss_pred HHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHC--CCCCCCCCCCHHHHHHHHHHH
Q ss_conf 986766677888865555021288872368764031046887777889998753211--468543346917999999988
Q gi|254780623|r 121 CEFDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQE--KLLPSMRRLCFSAVVRALEQV 198 (517)
Q Consensus 121 ~~fdePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~--~~~~~~~~~~~~~~~~e~~~~ 198 (517)
T Consensus 30 ~~l~~~I~~GKEa~Vy~a~~~~~~-g~~vavKi~r~~~~-----~Fk~~~---~y~~gd~Rf~-~~~~~~~~~~~~wA-- 97 (237)
T smart00090 30 SAIGGCISTGKEANVYHALDFDGS-GKERAVKIYRTGTL-----EFKRRD---RYVDGDFRFK-YRKINPRKLVRLWA-- 97 (237)
T ss_pred HHHCCEEECCCCCEEEEEEEECCC-CCEEEEEEEECCCC-----CCCCHH---HHCCCCCCCC-CCCCCHHHHHHHHH--
T ss_conf 553975402417037999844799-98899999774752-----305376---6336541025-68889889999999--
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCCEEEEECCCCCCCCHHHHHHHHCC---CHHHHHHHHHHHHH
Q ss_conf 788865599998898720244677664300001022178335300247863242677332002---25689999999999
Q gi|254780623|r 199 TKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITMEWIDGVKISDTEKLRACGH---DLERLSVTLVQSFL 275 (517)
Q Consensus 199 l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~VLvmE~i~G~~i~d~~~l~~~~~---d~~~la~~l~~~~~ 275 (517)
T Consensus 98 -------~kEf~nL~rl~~-----aGv~VP~Pi--~~~~nvlvMefIg~~~~pa-p~L~d~~~~~~~~~~~~~~il~~~- 161 (237)
T smart00090 98 -------EKEFRNLQRLYE-----AGVPVPKPI--AWRRNVLVMEFIGGDGLPA-PRLKDVEPEEEEEFELYDDILEEM- 161 (237)
T ss_pred -------HHHHHHHHHHHH-----CCCCCCCEE--EEECCEEEEEEECCCCCCC-CCHHCCCCCHHHHHHHHHHHHHHH-
T ss_conf -------999999999998-----599999848--9648989999746889745-432116888577999999999999-
Q ss_pred HHHHHCC-EECCCCCCCEEEEECCCCEEEEECCHHEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf 9897448-661787862289802895357434031216989999999766999718727899999984126677893689
Q gi|254780623|r 276 LHTLRDG-FFHADLHPGNLFVDSKGYIVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHFEAGYVPRHHNRFSF 354 (517)
Q Consensus 276 ~qi~~~G-fFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~lg~~~~~~d~~~~ 354 (517)
T Consensus 162 ~~~y~~g~lVHgDLSEyNIL~~-~~~~~iID~~QaV~~~hp~-------A~~~L~RDi~nI~~fF~k~g~~~~--~~~e~ 231 (237)
T smart00090 162 RKLYKEGELVHGDLSEYNILVH-DGKVVIIDVSQSVELDHPM-------ALEFLERDIRNIIRFFRRKGVDEL--DEEEL 231 (237)
T ss_pred HHHHHHCCEEECCHHHHHHEEE-CCCEEEEECCCCCCCCCCC-------HHHHHHHHHHHHHHHHHHCCCCCC--CHHHH
T ss_conf 9999827952036046551420-8967999467523689988-------899999999999999987399979--99999
Q ss_pred HH
Q ss_conf 99
Q gi|254780623|r 355 AQ 356 (517)
Q Consensus 355 ~~ 356 (517)
T Consensus 232 ~~ 233 (237)
T smart00090 232 FE 233 (237)
T ss_pred HH
T ss_conf 87