RPSBLAST alignment for GI: 254780623 and conserved domain: TIGR01982
>gnl|CDD|162638 TIGR01982, UbiB, 2-polyprenylphenol 6-hydroxylase. This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol -> 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species. Length = 437
Score = 543 bits (1402), Expect = e-155
Identities = 213/437 (48%), Positives = 292/437 (66%), Gaps = 4/437 (0%)
Query: 4 YYELFRIAWILIREGVIVSLPSDRLPPIIVFGKKIASLFVRRNIKKCQRSDRLARAMNRL 63
L RI +LIR G + + S P + +++ F R + R +RL A+ L
Sbjct: 1 LRRLRRIIRVLIRYGFLALVESPIGPLSLRLLRRLLLPFSNRENRLMSRGERLRLALEEL 60
Query: 64 GPSYVKMGQFLATRPDLIGKKLSEDLALLQDKMDFFPTNTARLSVASALKAPIEELYCEF 123
GP+++K GQ L+TR DL+ ++E+L+LLQD++ F AR + +AL P+EEL+ EF
Sbjct: 61 GPTFIKFGQTLSTRADLLPADIAEELSLLQDRVPPFDFKVARKVIEAALGGPLEELFAEF 120
Query: 124 DD-PIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPS 182
++ P+AAASIAQVH A + D ++VAVK++RPG+ K DI ++Y +ARI E+L P
Sbjct: 121 EEKPLAAASIAQVHRARLVD---GKEVAVKVLRPGIEKTIAADIALLYRLARIVERLSPD 177
Query: 183 MRRLCFSAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITM 242
RRL + VV+ E+ + E+DLR EAA SE+ EN D G VP++ W+RT V+TM
Sbjct: 178 SRRLRPTEVVKEFEKTLRRELDLRREAANASELGENFKNDPGVYVPEVYWDRTSERVLTM 237
Query: 243 EWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIV 302
EWIDG+ +SD L G D + L+ L +SFL LRDGFFHADLHPGN+FV G I+
Sbjct: 238 EWIDGIPLSDIAALDEAGLDRKALAENLARSFLNQVLRDGFFHADLHPGNIFVLKDGKII 297
Query: 303 AVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHFEAGYVPRHHNRFSFAQAIRAIG 362
A+D GI GRLS+ +RR+LAEILYGF++RDY+RVA+VHF+AGYVP + F QAIRAIG
Sbjct: 298 ALDFGIVGRLSEEDRRYLAEILYGFLNRDYRRVAEVHFDAGYVPSDTDMAEFEQAIRAIG 357
Query: 363 EPIHGQSSDVISMGKLLTMLFEITELFDMMTRPELVMLQKTMVVVEGVARMLNPEFNMWV 422
EPI GQ IS+G+LL LF+IT F+M +P+L++LQKT++ VEGV R L+P+ NMW
Sbjct: 358 EPIFGQPLKEISVGRLLAGLFKITRDFNMELQPQLLLLQKTLLTVEGVGRQLDPDLNMWK 417
Query: 423 SSEPIVEEWIRDHLGAK 439
+EP V+ WIR LG K
Sbjct: 418 VAEPFVKRWIRKRLGPK 434