RPSBLAST alignment for GI: 254780623 and conserved domain: TIGR01982

>gnl|CDD|162638 TIGR01982, UbiB, 2-polyprenylphenol 6-hydroxylase. This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol -> 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species. Length = 437
 Score =  543 bits (1402), Expect = e-155
 Identities = 213/437 (48%), Positives = 292/437 (66%), Gaps = 4/437 (0%)

Query: 4   YYELFRIAWILIREGVIVSLPSDRLPPIIVFGKKIASLFVRRNIKKCQRSDRLARAMNRL 63
              L RI  +LIR G +  + S   P  +   +++   F  R  +   R +RL  A+  L
Sbjct: 1   LRRLRRIIRVLIRYGFLALVESPIGPLSLRLLRRLLLPFSNRENRLMSRGERLRLALEEL 60

Query: 64  GPSYVKMGQFLATRPDLIGKKLSEDLALLQDKMDFFPTNTARLSVASALKAPIEELYCEF 123
           GP+++K GQ L+TR DL+   ++E+L+LLQD++  F    AR  + +AL  P+EEL+ EF
Sbjct: 61  GPTFIKFGQTLSTRADLLPADIAEELSLLQDRVPPFDFKVARKVIEAALGGPLEELFAEF 120

Query: 124 DD-PIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPS 182
           ++ P+AAASIAQVH A + D    ++VAVK++RPG+ K    DI ++Y +ARI E+L P 
Sbjct: 121 EEKPLAAASIAQVHRARLVD---GKEVAVKVLRPGIEKTIAADIALLYRLARIVERLSPD 177

Query: 183 MRRLCFSAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITM 242
            RRL  + VV+  E+  + E+DLR EAA  SE+ EN   D G  VP++ W+RT   V+TM
Sbjct: 178 SRRLRPTEVVKEFEKTLRRELDLRREAANASELGENFKNDPGVYVPEVYWDRTSERVLTM 237

Query: 243 EWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGYIV 302
           EWIDG+ +SD   L   G D + L+  L +SFL   LRDGFFHADLHPGN+FV   G I+
Sbjct: 238 EWIDGIPLSDIAALDEAGLDRKALAENLARSFLNQVLRDGFFHADLHPGNIFVLKDGKII 297

Query: 303 AVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHFEAGYVPRHHNRFSFAQAIRAIG 362
           A+D GI GRLS+ +RR+LAEILYGF++RDY+RVA+VHF+AGYVP   +   F QAIRAIG
Sbjct: 298 ALDFGIVGRLSEEDRRYLAEILYGFLNRDYRRVAEVHFDAGYVPSDTDMAEFEQAIRAIG 357

Query: 363 EPIHGQSSDVISMGKLLTMLFEITELFDMMTRPELVMLQKTMVVVEGVARMLNPEFNMWV 422
           EPI GQ    IS+G+LL  LF+IT  F+M  +P+L++LQKT++ VEGV R L+P+ NMW 
Sbjct: 358 EPIFGQPLKEISVGRLLAGLFKITRDFNMELQPQLLLLQKTLLTVEGVGRQLDPDLNMWK 417

Query: 423 SSEPIVEEWIRDHLGAK 439
            +EP V+ WIR  LG K
Sbjct: 418 VAEPFVKRWIRKRLGPK 434