BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780623|ref|YP_003065036.1| 2-polyprenylphenol 6-hydroxylase [Candidatus Liberibacter asiaticus str. psy62] (517 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780623|ref|YP_003065036.1| 2-polyprenylphenol 6-hydroxylase [Candidatus Liberibacter asiaticus str. psy62] Length = 517 Score = 1060 bits (2742), Expect = 0.0, Method: Compositional matrix adjust. Identities = 517/517 (100%), Positives = 517/517 (100%) Query: 1 MKEYYELFRIAWILIREGVIVSLPSDRLPPIIVFGKKIASLFVRRNIKKCQRSDRLARAM 60 MKEYYELFRIAWILIREGVIVSLPSDRLPPIIVFGKKIASLFVRRNIKKCQRSDRLARAM Sbjct: 1 MKEYYELFRIAWILIREGVIVSLPSDRLPPIIVFGKKIASLFVRRNIKKCQRSDRLARAM 60 Query: 61 NRLGPSYVKMGQFLATRPDLIGKKLSEDLALLQDKMDFFPTNTARLSVASALKAPIEELY 120 NRLGPSYVKMGQFLATRPDLIGKKLSEDLALLQDKMDFFPTNTARLSVASALKAPIEELY Sbjct: 61 NRLGPSYVKMGQFLATRPDLIGKKLSEDLALLQDKMDFFPTNTARLSVASALKAPIEELY 120 Query: 121 CEFDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLL 180 CEFDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLL Sbjct: 121 CEFDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLL 180 Query: 181 PSMRRLCFSAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVI 240 PSMRRLCFSAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVI Sbjct: 181 PSMRRLCFSAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVI 240 Query: 241 TMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGY 300 TMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGY Sbjct: 241 TMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGY 300 Query: 301 IVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHFEAGYVPRHHNRFSFAQAIRA 360 IVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHFEAGYVPRHHNRFSFAQAIRA Sbjct: 301 IVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHFEAGYVPRHHNRFSFAQAIRA 360 Query: 361 IGEPIHGQSSDVISMGKLLTMLFEITELFDMMTRPELVMLQKTMVVVEGVARMLNPEFNM 420 IGEPIHGQSSDVISMGKLLTMLFEITELFDMMTRPELVMLQKTMVVVEGVARMLNPEFNM Sbjct: 361 IGEPIHGQSSDVISMGKLLTMLFEITELFDMMTRPELVMLQKTMVVVEGVARMLNPEFNM 420 Query: 421 WVSSEPIVEEWIRDHLGAKSCVVDFQDGIKTAFRLVQAAPQLSISVEKILKSLVESSVKD 480 WVSSEPIVEEWIRDHLGAKSCVVDFQDGIKTAFRLVQAAPQLSISVEKILKSLVESSVKD Sbjct: 421 WVSSEPIVEEWIRDHLGAKSCVVDFQDGIKTAFRLVQAAPQLSISVEKILKSLVESSVKD 480 Query: 481 KYLDFPKKESSRVYDFLNKLVLWSIFGALLYIISIMR 517 KYLDFPKKESSRVYDFLNKLVLWSIFGALLYIISIMR Sbjct: 481 KYLDFPKKESSRVYDFLNKLVLWSIFGALLYIISIMR 517 >gi|254780663|ref|YP_003065076.1| carbonate dehydratase [Candidatus Liberibacter asiaticus str. psy62] Length = 207 Score = 25.4 bits (54), Expect = 2.2, Method: Compositional matrix adjust. Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 13/58 (22%) Query: 19 VIVSLPSDRLPPIIVFGKKIASLFVRRNIKKCQRSDRLARAMNRLGPSYVKMGQFLAT 76 +I+S R+ P +F K LFV RN+ + P Y GQ AT Sbjct: 37 MIISCCDSRVAPETIFNAKPGELFVVRNVAN-------------IVPPYEPDGQHHAT 81 >gi|254781103|ref|YP_003065516.1| penicillin-binding transmembrane protein [Candidatus Liberibacter asiaticus str. psy62] Length = 598 Score = 25.0 bits (53), Expect = 2.7, Method: Compositional matrix adjust. Identities = 13/46 (28%), Positives = 23/46 (50%) Query: 197 QVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITM 242 Q ++ +DLR++ E+ EN K V + N + +VI+M Sbjct: 254 QPIRLALDLRIQNIVHQELVENKKKYNAESVGTVILNVSTGEVISM 299 >gi|254781163|ref|YP_003065576.1| hypothetical protein CLIBASIA_05350 [Candidatus Liberibacter asiaticus str. psy62] Length = 214 Score = 24.6 bits (52), Expect = 3.8, Method: Compositional matrix adjust. Identities = 13/36 (36%), Positives = 18/36 (50%) Query: 129 AASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFR 164 A IAQ+ + + NGY + KI + V K FF Sbjct: 109 AKDIAQLFTLIDNIENGYGQYLEKISQKNVEKDFFN 144 >gi|254780826|ref|YP_003065239.1| phosphoenolpyruvate carboxykinase [Candidatus Liberibacter asiaticus str. psy62] Length = 509 Score = 24.6 bits (52), Expect = 4.0, Method: Compositional matrix adjust. Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%) Query: 238 DVITMEWIDGVKISDT--EKLRACGHDLERLSVTLVQSFLLHTL 279 D + + +D +K D + L AC H +SV +V + H+L Sbjct: 80 DTLKADMLDYIKDKDLFLQDLVACPHTKNAISVCVVTQYAWHSL 123 >gi|254781187|ref|YP_003065600.1| putative phage terminase, large subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 367 Score = 24.6 bits (52), Expect = 4.2, Method: Compositional matrix adjust. Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 5/46 (10%) Query: 206 RLEAAAFSEMAENTVKDQG-----FRVPKIDWNRTERDVITMEWID 246 L F M NT + G F +P DW R + D T+E ID Sbjct: 217 ELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGID 262 >gi|254781024|ref|YP_003065437.1| electron transfer flavoprotein-ubiquinone oxidoreductase [Candidatus Liberibacter asiaticus str. psy62] Length = 554 Score = 23.9 bits (50), Expect = 7.5, Method: Compositional matrix adjust. Identities = 8/29 (27%), Positives = 18/29 (62%) Query: 474 VESSVKDKYLDFPKKESSRVYDFLNKLVL 502 +E++ + K +D+PK + +D ++ L L Sbjct: 435 LEAASQHKKIDYPKPDGKLTFDIMSSLFL 463 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.326 0.139 0.408 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 305,301 Number of Sequences: 1233 Number of extensions: 11677 Number of successful extensions: 46 Number of sequences better than 100.0: 8 Number of HSP's better than 100.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 40 Number of HSP's gapped (non-prelim): 8 length of query: 517 length of database: 328,796 effective HSP length: 78 effective length of query: 439 effective length of database: 232,622 effective search space: 102121058 effective search space used: 102121058 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 40 (20.0 bits)