BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780623|ref|YP_003065036.1| 2-polyprenylphenol
6-hydroxylase [Candidatus Liberibacter asiaticus str. psy62]
(517 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780623|ref|YP_003065036.1| 2-polyprenylphenol 6-hydroxylase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 517
Score = 1060 bits (2742), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 517/517 (100%), Positives = 517/517 (100%)
Query: 1 MKEYYELFRIAWILIREGVIVSLPSDRLPPIIVFGKKIASLFVRRNIKKCQRSDRLARAM 60
MKEYYELFRIAWILIREGVIVSLPSDRLPPIIVFGKKIASLFVRRNIKKCQRSDRLARAM
Sbjct: 1 MKEYYELFRIAWILIREGVIVSLPSDRLPPIIVFGKKIASLFVRRNIKKCQRSDRLARAM 60
Query: 61 NRLGPSYVKMGQFLATRPDLIGKKLSEDLALLQDKMDFFPTNTARLSVASALKAPIEELY 120
NRLGPSYVKMGQFLATRPDLIGKKLSEDLALLQDKMDFFPTNTARLSVASALKAPIEELY
Sbjct: 61 NRLGPSYVKMGQFLATRPDLIGKKLSEDLALLQDKMDFFPTNTARLSVASALKAPIEELY 120
Query: 121 CEFDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLL 180
CEFDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLL
Sbjct: 121 CEFDDPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLL 180
Query: 181 PSMRRLCFSAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVI 240
PSMRRLCFSAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVI
Sbjct: 181 PSMRRLCFSAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVI 240
Query: 241 TMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGY 300
TMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGY
Sbjct: 241 TMEWIDGVKISDTEKLRACGHDLERLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSKGY 300
Query: 301 IVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHFEAGYVPRHHNRFSFAQAIRA 360
IVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHFEAGYVPRHHNRFSFAQAIRA
Sbjct: 301 IVAVDMGITGRLSKRERRFLAEILYGFISRDYQRVADVHFEAGYVPRHHNRFSFAQAIRA 360
Query: 361 IGEPIHGQSSDVISMGKLLTMLFEITELFDMMTRPELVMLQKTMVVVEGVARMLNPEFNM 420
IGEPIHGQSSDVISMGKLLTMLFEITELFDMMTRPELVMLQKTMVVVEGVARMLNPEFNM
Sbjct: 361 IGEPIHGQSSDVISMGKLLTMLFEITELFDMMTRPELVMLQKTMVVVEGVARMLNPEFNM 420
Query: 421 WVSSEPIVEEWIRDHLGAKSCVVDFQDGIKTAFRLVQAAPQLSISVEKILKSLVESSVKD 480
WVSSEPIVEEWIRDHLGAKSCVVDFQDGIKTAFRLVQAAPQLSISVEKILKSLVESSVKD
Sbjct: 421 WVSSEPIVEEWIRDHLGAKSCVVDFQDGIKTAFRLVQAAPQLSISVEKILKSLVESSVKD 480
Query: 481 KYLDFPKKESSRVYDFLNKLVLWSIFGALLYIISIMR 517
KYLDFPKKESSRVYDFLNKLVLWSIFGALLYIISIMR
Sbjct: 481 KYLDFPKKESSRVYDFLNKLVLWSIFGALLYIISIMR 517
>gi|254780663|ref|YP_003065076.1| carbonate dehydratase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 207
Score = 25.4 bits (54), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 13/58 (22%)
Query: 19 VIVSLPSDRLPPIIVFGKKIASLFVRRNIKKCQRSDRLARAMNRLGPSYVKMGQFLAT 76
+I+S R+ P +F K LFV RN+ + P Y GQ AT
Sbjct: 37 MIISCCDSRVAPETIFNAKPGELFVVRNVAN-------------IVPPYEPDGQHHAT 81
>gi|254781103|ref|YP_003065516.1| penicillin-binding transmembrane protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 598
Score = 25.0 bits (53), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 197 QVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERDVITM 242
Q ++ +DLR++ E+ EN K V + N + +VI+M
Sbjct: 254 QPIRLALDLRIQNIVHQELVENKKKYNAESVGTVILNVSTGEVISM 299
>gi|254781163|ref|YP_003065576.1| hypothetical protein CLIBASIA_05350 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 214
Score = 24.6 bits (52), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 129 AASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFR 164
A IAQ+ + + NGY + KI + V K FF
Sbjct: 109 AKDIAQLFTLIDNIENGYGQYLEKISQKNVEKDFFN 144
>gi|254780826|ref|YP_003065239.1| phosphoenolpyruvate carboxykinase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 509
Score = 24.6 bits (52), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 238 DVITMEWIDGVKISDT--EKLRACGHDLERLSVTLVQSFLLHTL 279
D + + +D +K D + L AC H +SV +V + H+L
Sbjct: 80 DTLKADMLDYIKDKDLFLQDLVACPHTKNAISVCVVTQYAWHSL 123
>gi|254781187|ref|YP_003065600.1| putative phage terminase, large subunit [Candidatus Liberibacter
asiaticus str. psy62]
Length = 367
Score = 24.6 bits (52), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 5/46 (10%)
Query: 206 RLEAAAFSEMAENTVKDQG-----FRVPKIDWNRTERDVITMEWID 246
L F M NT + G F +P DW R + D T+E ID
Sbjct: 217 ELNPNRFWIMTSNTRRLNGWFYDIFNIPLEDWKRYQIDTRTVEGID 262
>gi|254781024|ref|YP_003065437.1| electron transfer flavoprotein-ubiquinone oxidoreductase
[Candidatus Liberibacter asiaticus str. psy62]
Length = 554
Score = 23.9 bits (50), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 8/29 (27%), Positives = 18/29 (62%)
Query: 474 VESSVKDKYLDFPKKESSRVYDFLNKLVL 502
+E++ + K +D+PK + +D ++ L L
Sbjct: 435 LEAASQHKKIDYPKPDGKLTFDIMSSLFL 463
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.326 0.139 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 305,301
Number of Sequences: 1233
Number of extensions: 11677
Number of successful extensions: 46
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 40
Number of HSP's gapped (non-prelim): 8
length of query: 517
length of database: 328,796
effective HSP length: 78
effective length of query: 439
effective length of database: 232,622
effective search space: 102121058
effective search space used: 102121058
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 40 (20.0 bits)