HHsearch alignment for GI: 254780624 and conserved domain: COG0144

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis].
Probab=98.47  E-value=2.1e-07  Score=67.93  Aligned_cols=115  Identities=25%  Similarity=0.399  Sum_probs=83.9

Q ss_pred             HHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCE-EEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCC---C
Q ss_conf             8520644679977986023355777776641388632-78721332222111100000112222222222233345---7
Q gi|254780624|r   61 VTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQ-IVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLP---F  136 (265)
Q Consensus        61 i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~-v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp---~  136 (265)
T Consensus       149 a~~L~p~pg--e~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~-nv~~~~~d~~~~~~~~~  225 (355)
T COG0144         149 ALVLDPKPG--ERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVR-NVIVVNKDARRLAELLP  225 (355)
T ss_pred             HHHCCCCCC--CEEEECCCCCCHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHCCC-CEEEEECCCCCCCCCCC
T ss_conf             997199997--968880799976999999966899876997449878999999999971998-34899513301431134


Q ss_pred             CCCCCCCCE-----EEEE-ECCCHH----------------HHHHHCCCCHHCCCCCEEEEEECCCC
Q ss_conf             554467403-----6642-013213----------------44320121000485211776305544
Q gi|254780624|r  137 EANSFDACT-----LAFG-IRNMPH----------------ITLVLQEIYRILKCGGRLLVLEFSEV  181 (265)
Q Consensus       137 ~d~sfD~V~-----~sf~-l~~~~d----------------~~~~l~e~~RvLKpGG~~~i~df~~p  181 (265)
T Consensus       226 ~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LV---YSTC  289 (355)
T COG0144         226 GGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLV---YSTC  289 (355)
T ss_pred             CCCCCCEEEECCCCCCCEEECCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEE---EEEC
T ss_conf             557778599879998771133581232038999999999999999999998448798899---9902