HHsearch alignment for GI: 254780624 and conserved domain: COG0293
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis].
Probab=98.09 E-value=9.5e-06 Score=57.20 Aligned_cols=97 Identities=21% Similarity=0.273 Sum_probs=69.2
Q ss_pred CCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCC--------CCCCCC
Q ss_conf 997798602335577777664138863278721332222111100000112222222222233345--------755446
Q gi|254780624|r 70 KDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLP--------FEANSF 141 (265)
Q Consensus 70 ~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp--------~~d~sf 141 (265)
T Consensus 45 ~~~~ViDLGAAPGgWsQva~~~~~~~~~vvavDi~p~~------------~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~ 112 (205)
T COG0293 45 PGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK------------PIPGVIFLQGDITDEDTLEKLLEALGGAPV 112 (205)
T ss_pred CCCEEEECCCCCCCHHHHHHHHHCCCCCEEEEECCCCC------------CCCCCEEEEEECCCCCHHHHHHHHCCCCCC
T ss_conf 89879983879984999999973888848999775455------------678946884132484379999987077876
Q ss_pred CCCEEEE-----EECCCHH------HHHHHCCCCHHCCCCCEEEEEEC
Q ss_conf 7403664-----2013213------44320121000485211776305
Q gi|254780624|r 142 DACTLAF-----GIRNMPH------ITLVLQEIYRILKCGGRLLVLEF 178 (265)
Q Consensus 142 D~V~~sf-----~l~~~~d------~~~~l~e~~RvLKpGG~~~i~df 178 (265)
T Consensus 113 DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~f 160 (205)
T COG0293 113 DVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVF 160 (205)
T ss_pred CEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEECCCCEEEEEEE
T ss_conf 668725887767872200889999999999999872578983999997