HHsearch alignment for GI: 254780624 and conserved domain: COG0293

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis].
Probab=98.09  E-value=9.5e-06  Score=57.20  Aligned_cols=97  Identities=21%  Similarity=0.273  Sum_probs=69.2

Q ss_pred             CCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCC--------CCCCCC
Q ss_conf             997798602335577777664138863278721332222111100000112222222222233345--------755446
Q gi|254780624|r   70 KDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLP--------FEANSF  141 (265)
Q Consensus        70 ~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp--------~~d~sf  141 (265)
T Consensus        45 ~~~~ViDLGAAPGgWsQva~~~~~~~~~vvavDi~p~~------------~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~  112 (205)
T COG0293          45 PGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK------------PIPGVIFLQGDITDEDTLEKLLEALGGAPV  112 (205)
T ss_pred             CCCEEEECCCCCCCHHHHHHHHHCCCCCEEEEECCCCC------------CCCCCEEEEEECCCCCHHHHHHHHCCCCCC
T ss_conf             89879983879984999999973888848999775455------------678946884132484379999987077876


Q ss_pred             CCCEEEE-----EECCCHH------HHHHHCCCCHHCCCCCEEEEEEC
Q ss_conf             7403664-----2013213------44320121000485211776305
Q gi|254780624|r  142 DACTLAF-----GIRNMPH------ITLVLQEIYRILKCGGRLLVLEF  178 (265)
Q Consensus       142 D~V~~sf-----~l~~~~d------~~~~l~e~~RvLKpGG~~~i~df  178 (265)
T Consensus       113 DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~f  160 (205)
T COG0293         113 DVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVF  160 (205)
T ss_pred             CEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEECCCCEEEEEEE
T ss_conf             668725887767872200889999999999999872578983999997