HHsearch alignment for GI: 254780624 and conserved domain: COG1189
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis].
Probab=97.57 E-value=0.00086 Score=44.60 Aligned_cols=177 Identities=16% Similarity=0.169 Sum_probs=104.2
Q ss_pred HHHCCCHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCC-CC
Q ss_conf 76148017999999852064467997798602335577777664138863278721332222111100000112222-22
Q gi|254780624|r 47 LMSLGLHRFWKEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDC-IT 125 (265)
Q Consensus 47 ~~S~G~~r~Wr~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~-i~ 125 (265)
T Consensus 59 yVSRG~~KL--~~ale~F~l~~k-~kv~LDiGsSTGGFTd~lLq~gA--k~VyavDVG~~Ql~~k---LR~---d~rV~~ 127 (245)
T COG1189 59 YVSRGGLKL--EKALEEFELDVK-GKVVLDIGSSTGGFTDVLLQRGA--KHVYAVDVGYGQLHWK---LRN---DPRVIV 127 (245)
T ss_pred CCCCHHHHH--HHHHHHCCCCCC-CCEEEEECCCCCCHHHHHHHCCC--CEEEEEECCCCCCCHH---HHC---CCCEEE
T ss_conf 626189999--999996486889-97899826787629999987587--4799997037743786---735---984799
Q ss_pred CCCCCCCCCC---CCCCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCHHHHHH
Q ss_conf 2222233345---7554467403664201321344320121000485211776305544551011234565311133210
Q gi|254780624|r 126 FIEANAETLP---FEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYDMWSFKVIPQLG 202 (265)
Q Consensus 126 ~~~~da~~lp---~~d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~df~~p~~~~~~~~~~~y~~~iiP~~g 202 (265)
T Consensus 128 ~E~tN~r~l~~~~~~~-~~d~~v~DvS---FISL~~iLp~l~~l~~~~~~~v~L--vKPQFEagr~~--------v~-kk 192 (245)
T COG1189 128 LERTNVRYLTPEDFTE-KPDLIVIDVS---FISLKLILPALLLLLKDGGDLVLL--VKPQFEAGREQ--------VG-KK 192 (245)
T ss_pred EECCCHHHCCHHHCCC-CCCEEEEEEE---HHHHHHHHHHHHHHCCCCCEEEEE--ECCHHHHHHHH--------CC-CC
T ss_conf 8527831189878176-7784799642---331998889999742788638997--36555540432--------27-68
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEE--ECCC---CEEEEEEEEEEC
Q ss_conf 25428876865789999968998999999997599537999--8556---649999998116
Q gi|254780624|r 203 RFIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVSFT--NYTN---GVVALHSGWKCE 259 (265)
Q Consensus 203 ~~~~~~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~~~--~~~~---Gi~~i~~g~Kp~ 259 (265)
T Consensus 193 Gvv-~d~~~~-------~~--v~~~i~~~~~~~g~~~~gl~~Spi~G~~GNiE~l~~~~k~~ 244 (245)
T COG1189 193 GVV-RDPKLH-------AE--VLSKIENFAKELGFQVKGLIKSPIKGGKGNIEFLLLLKKSG 244 (245)
T ss_pred CEE-CCCCHH-------HH--HHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEEEEEECCC
T ss_conf 634-480158-------99--99999988864595786557267767878675624110368