HHsearch alignment for GI: 254780624 and conserved domain: PRK00274
>PRK00274 ksgA dimethyladenosine transferase; Reviewed.
Probab=97.98 E-value=6.9e-06 Score=58.12 Aligned_cols=78 Identities=23% Similarity=0.399 Sum_probs=60.5
Q ss_pred HCCCH----HHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCC
Q ss_conf 14801----79999998520644679977986023355777776641388632787213322221111000001122222
Q gi|254780624|r 49 SLGLH----RFWKEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCI 124 (265)
Q Consensus 49 S~G~~----r~Wr~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i 124 (265)
T Consensus 16 ~lGQnFL~d~~ii~kIv~~~~~~~~--d~VlEIGpG~G~LT~~Ll~~~---~~v~aiEiD~~l~~~L~~~-------~~~ 83 (267)
T PRK00274 16 SLGQNFLIDENIIDKIVRAADLQPG--DRVLEIGPGLGALTEPLLERA---AKVTAIEIDRDLAPILRET-------DNL 83 (267)
T ss_pred CCCCCCCCCHHHHHHHHHHCCCCCC--CEEEEECCCCCHHHHHHHHHC---CCEEEEECCHHHHHHHHHC-------CCE
T ss_conf 7782214898999999996089999--907996388888999999626---8058863688999998504-------786
Q ss_pred CCCCCCCCCCCCCC
Q ss_conf 22222233345755
Q gi|254780624|r 125 TFIEANAETLPFEA 138 (265)
Q Consensus 125 ~~~~~da~~lp~~d 138 (265)
T Consensus 84 ~ii~~D~L~~~~~~ 97 (267)
T PRK00274 84 TIIEGDALKVDLEE 97 (267)
T ss_pred EEEECHHHHCCHHH
T ss_conf 99965066478677