HHsearch alignment for GI: 254780624 and conserved domain: PRK03522
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed.
Probab=98.38 E-value=2.7e-07 Score=67.17 Aligned_cols=81 Identities=12% Similarity=0.165 Sum_probs=61.2
Q ss_pred HHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCC-CC
Q ss_conf 99852064467997798602335577777664138863278721332222111100000112222222222233345-75
Q gi|254780624|r 59 AMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLP-FE 137 (265)
Q Consensus 59 ~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp-~~ 137 (265)
T Consensus 224 ~~~~~~~~~~--~~~vlDlycG~G~~sl~lA~~~---~~V~gvE~~~~av~~A~~na~~ngi-~nv~f~~~d~~~~~~~~ 297 (375)
T PRK03522 224 TARDWVRELP--PKSMWDLFCGVGGFGLHCATPD---MQLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFATAQ 297 (375)
T ss_pred HHHHHHHCCC--CCEEEEECCCCCHHHHHHHHCC---CEEEEEEECHHHHHHHHHHHHHCCC-CCEEEEECCHHHHHHHC
T ss_conf 9999863158--9789996578538889876417---8899998459999999999998699-87699973778887634
Q ss_pred CCCCCCCE
Q ss_conf 54467403
Q gi|254780624|r 138 ANSFDACT 145 (265)
Q Consensus 138 d~sfD~V~ 145 (265)
T Consensus 298 ~~~~d~vv 305 (375)
T PRK03522 298 GEVPELVL 305 (375)
T ss_pred CCCCCEEE
T ss_conf 56897899