HHsearch alignment for GI: 254780624 and conserved domain: PRK10901
>PRK10901 16S rRNA methyltransferase B; Provisional.
Probab=98.85 E-value=3.3e-09 Score=79.53 Aligned_cols=112 Identities=29% Similarity=0.424 Sum_probs=83.0
Q ss_pred HHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCC--C
Q ss_conf 99852064467997798602335577777664138863278721332222111100000112222222222233345--7
Q gi|254780624|r 59 AMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLP--F 136 (265)
Q Consensus 59 ~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp--~ 136 (265)
T Consensus 236 l~~~ll~p~~g--~~VLD~CAaPGGKt~~la~~~-~~~~v~A~D~~~~Rl~~l~~n~~Rlg~~--~~v~~~d~~~~~~~~ 310 (428)
T PRK10901 236 GCVTLLAPQNG--EHILDLCAAPGGKTTHILEVA-PEAQVLAVDIDEQRLSRVYDNLKRLGMK--ATVKQGDGRYPSQWC 310 (428)
T ss_pred HHHHHCCCCCC--CEEEEECCCCCHHHHHHHHHC-CCCCEEEEECCHHHHHHHHHHHHHCCCC--EEEEECCCCCHHHHC
T ss_conf 89986498889--879871688766899999964-5892899969888999999999975997--399977655723313
Q ss_pred CCCCCCCCEE-----EEE-ECCCHHH----------------HHHHCCCCHHCCCCCEEEE
Q ss_conf 5544674036-----642-0132134----------------4320121000485211776
Q gi|254780624|r 137 EANSFDACTL-----AFG-IRNMPHI----------------TLVLQEIYRILKCGGRLLV 175 (265)
Q Consensus 137 ~d~sfD~V~~-----sf~-l~~~~d~----------------~~~l~e~~RvLKpGG~~~i 175 (265)
T Consensus 311 ~~~~fD~ILlDaPCSg~G~lrR~Pdikw~~~~~di~~l~~lQ~~iL~~a~~~lk~gG~LvY 371 (428)
T PRK10901 311 GEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQSEILDAIWPHLKSGGTLVY 371 (428)
T ss_pred CCCCCCEEEECCCCCCCEEECCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 4456787997589888724446854211289999999999999999999986688988999