HHsearch alignment for GI: 254780624 and conserved domain: PRK10901

>PRK10901 16S rRNA methyltransferase B; Provisional.
Probab=98.85  E-value=3.3e-09  Score=79.53  Aligned_cols=112  Identities=29%  Similarity=0.424  Sum_probs=83.0

Q ss_pred             HHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCC--C
Q ss_conf             99852064467997798602335577777664138863278721332222111100000112222222222233345--7
Q gi|254780624|r   59 AMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLP--F  136 (265)
Q Consensus        59 ~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp--~  136 (265)
T Consensus       236 l~~~ll~p~~g--~~VLD~CAaPGGKt~~la~~~-~~~~v~A~D~~~~Rl~~l~~n~~Rlg~~--~~v~~~d~~~~~~~~  310 (428)
T PRK10901        236 GCVTLLAPQNG--EHILDLCAAPGGKTTHILEVA-PEAQVLAVDIDEQRLSRVYDNLKRLGMK--ATVKQGDGRYPSQWC  310 (428)
T ss_pred             HHHHHCCCCCC--CEEEEECCCCCHHHHHHHHHC-CCCCEEEEECCHHHHHHHHHHHHHCCCC--EEEEECCCCCHHHHC
T ss_conf             89986498889--879871688766899999964-5892899969888999999999975997--399977655723313


Q ss_pred             CCCCCCCCEE-----EEE-ECCCHHH----------------HHHHCCCCHHCCCCCEEEE
Q ss_conf             5544674036-----642-0132134----------------4320121000485211776
Q gi|254780624|r  137 EANSFDACTL-----AFG-IRNMPHI----------------TLVLQEIYRILKCGGRLLV  175 (265)
Q Consensus       137 ~d~sfD~V~~-----sf~-l~~~~d~----------------~~~l~e~~RvLKpGG~~~i  175 (265)
T Consensus       311 ~~~~fD~ILlDaPCSg~G~lrR~Pdikw~~~~~di~~l~~lQ~~iL~~a~~~lk~gG~LvY  371 (428)
T PRK10901        311 GEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQSEILDAIWPHLKSGGTLVY  371 (428)
T ss_pred             CCCCCCEEEECCCCCCCEEECCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf             4456787997589888724446854211289999999999999999999986688988999