HHsearch alignment for GI: 254780624 and conserved domain: PRK11783
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional.
Probab=96.18 E-value=0.0063 Score=39.03 Aligned_cols=118 Identities=22% Similarity=0.296 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCC-CCCCCCCCCC
Q ss_conf 179999998520644679977986023355777776641388632787213322221111000001122-2222222223
Q gi|254780624|r 53 HRFWKEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQ-DCITFIEANA 131 (265)
Q Consensus 53 ~r~Wr~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~-~~i~~~~~da 131 (265)
T Consensus 540 hR~~R~~i~~~a-----~gk~fLNLF~YTgt~sv~Aa~g--GA~~t~sVD~S~tyl~Wa~~N~~lN~~~~~~h~~v~aD~ 612 (716)
T PRK11783 540 HRPTRRMIGQMA-----KGKRFLNLFAYTGTASVHAALG--GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRFIQADC 612 (716)
T ss_pred CHHHHHHHHHHH-----CCCCEEEEEECCCCEEHHHHHC--CCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCEEEECCH
T ss_conf 379999999970-----7884643122256102133527--961227862708799999999985499963473896408
Q ss_pred CC-CCCCCCCCCCCEE---EEE----EC---CC-HHHHHHHCCCCHHCCCCCEEEEEECCC
Q ss_conf 33-4575544674036---642----01---32-134432012100048521177630554
Q gi|254780624|r 132 ET-LPFEANSFDACTL---AFG----IR---NM-PHITLVLQEIYRILKCGGRLLVLEFSE 180 (265)
Q Consensus 132 ~~-lp~~d~sfD~V~~---sf~----l~---~~-~d~~~~l~e~~RvLKpGG~~~i~df~~ 180 (265)
T Consensus 613 ~~wl~~~~~~fDli~~DPPtFSnSk~m~~~~dvqrDh~~li~~~~~~L~~~G~l~---FS~ 670 (716)
T PRK11783 613 LAWLKEAREQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKLAMRLLRPGGTLY---FSN 670 (716)
T ss_pred HHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEE---EEC
T ss_conf 9999857776678998899998766678863220309999999998608996899---962