HHsearch alignment for GI: 254780624 and conserved domain: PRK13341
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed.
Probab=96.63 E-value=0.065 Score=32.52 Aligned_cols=168 Identities=13% Similarity=0.127 Sum_probs=89.5
Q ss_pred HHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCC--
Q ss_conf 999852064467997798602335577777664138863278721332222111100000112222222222233345--
Q gi|254780624|r 58 EAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLP-- 135 (265)
Q Consensus 58 ~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp-- 135 (265)
T Consensus 482 ~rl~~~~~~--qr~~~vl~l~~~sll~~~~~l~~~peggv~~~~~~~~~~~rL-~aQl~lLdpL~RP~Ll~~~~~~l~~L 558 (726)
T PRK13341 482 DRLWSGITW--QRHDRVLNLANRSLLWALEPLRAVPEGGVTVLCESSDDIVRL-EAQLDLLDPLGRPVLLDAGLLALKYL 558 (726)
T ss_pred HHHHCCCCC--CCCCEEEEECCCCHHHHHHHHHHCCCCCEEEEECCHHHHHHH-HHHHHHCCHHCCCCEEECCCHHHHHC
T ss_conf 998433665--634359983385126526778618998669983788899999-99987468111971121671146537
Q ss_pred CCCCCCCCCEEEEEECCCHHH--HHHHCCCCHHCCCCCEEEEEECCCCCCCH-HHHHHHHHHHCHHHHHHHHHCCCHHHH
Q ss_conf 755446740366420132134--43201210004852117763055445510-112345653111332102542887686
Q gi|254780624|r 136 FEANSFDACTLAFGIRNMPHI--TLVLQEIYRILKCGGRLLVLEFSEVQGPV-FKKIYDMWSFKVIPQLGRFIAGDEEPY 212 (265)
Q Consensus 136 ~~d~sfD~V~~sf~l~~~~d~--~~~l~e~~RvLKpGG~~~i~df~~p~~~~-~~~~~~~y~~~iiP~~g~~~~~~~~~Y 212 (265)
T Consensus 559 ~~~~~FE~IgGR~~~~~l~~~~~~~~~q~L~~~l~p~g~l~Ll~-S~P~~Gpa~all~~----~---------~~~~~~l 624 (726)
T PRK13341 559 PANLQFEWIGGRNGLDDLLYKADEELWQQLTEKLTPNGGLRLLI-SQPEAGPALALLLK----A---------PVEDKLL 624 (726)
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEE-CCCCCCCHHHHHCC----C---------CCHHHHH
T ss_conf 98764247833320023422569999999998659986699863-57764807887356----9---------4048999
Q ss_pred HHHHHHHHHC----CCHHHHHHHHHHCCCCEEEEE
Q ss_conf 5789999968----998999999997599537999
Q gi|254780624|r 213 QYLIESIRRF----PNQQDFAAVISAAGFSNVSFT 243 (265)
Q Consensus 213 ~yL~~Si~~f----~~~~el~~~l~~aGF~~v~~~ 243 (265)
T Consensus 625 ~~L~~aEe~wl~~~~~~~~Lqq~le~~gws-l~~e 658 (726)
T PRK13341 625 SALLEAEELWLKSQSMPALLQQQLEEAGWS-LGIE 658 (726)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHCCCC-CEEE
T ss_conf 999999999962688859999999974884-5351