HHsearch alignment for GI: 254780624 and conserved domain: PRK13341

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed.
Probab=96.63  E-value=0.065  Score=32.52  Aligned_cols=168  Identities=13%  Similarity=0.127  Sum_probs=89.5

Q ss_pred             HHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCC--
Q ss_conf             999852064467997798602335577777664138863278721332222111100000112222222222233345--
Q gi|254780624|r   58 EAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLP--  135 (265)
Q Consensus        58 ~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp--  135 (265)
T Consensus       482 ~rl~~~~~~--qr~~~vl~l~~~sll~~~~~l~~~peggv~~~~~~~~~~~rL-~aQl~lLdpL~RP~Ll~~~~~~l~~L  558 (726)
T PRK13341        482 DRLWSGITW--QRHDRVLNLANRSLLWALEPLRAVPEGGVTVLCESSDDIVRL-EAQLDLLDPLGRPVLLDAGLLALKYL  558 (726)
T ss_pred             HHHHCCCCC--CCCCEEEEECCCCHHHHHHHHHHCCCCCEEEEECCHHHHHHH-HHHHHHCCHHCCCCEEECCCHHHHHC
T ss_conf             998433665--634359983385126526778618998669983788899999-99987468111971121671146537


Q ss_pred             CCCCCCCCCEEEEEECCCHHH--HHHHCCCCHHCCCCCEEEEEECCCCCCCH-HHHHHHHHHHCHHHHHHHHHCCCHHHH
Q ss_conf             755446740366420132134--43201210004852117763055445510-112345653111332102542887686
Q gi|254780624|r  136 FEANSFDACTLAFGIRNMPHI--TLVLQEIYRILKCGGRLLVLEFSEVQGPV-FKKIYDMWSFKVIPQLGRFIAGDEEPY  212 (265)
Q Consensus       136 ~~d~sfD~V~~sf~l~~~~d~--~~~l~e~~RvLKpGG~~~i~df~~p~~~~-~~~~~~~y~~~iiP~~g~~~~~~~~~Y  212 (265)
T Consensus       559 ~~~~~FE~IgGR~~~~~l~~~~~~~~~q~L~~~l~p~g~l~Ll~-S~P~~Gpa~all~~----~---------~~~~~~l  624 (726)
T PRK13341        559 PANLQFEWIGGRNGLDDLLYKADEELWQQLTEKLTPNGGLRLLI-SQPEAGPALALLLK----A---------PVEDKLL  624 (726)
T ss_pred             CCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEE-CCCCCCCHHHHHCC----C---------CCHHHHH
T ss_conf             98764247833320023422569999999998659986699863-57764807887356----9---------4048999


Q ss_pred             HHHHHHHHHC----CCHHHHHHHHHHCCCCEEEEE
Q ss_conf             5789999968----998999999997599537999
Q gi|254780624|r  213 QYLIESIRRF----PNQQDFAAVISAAGFSNVSFT  243 (265)
Q Consensus       213 ~yL~~Si~~f----~~~~el~~~l~~aGF~~v~~~  243 (265)
T Consensus       625 ~~L~~aEe~wl~~~~~~~~Lqq~le~~gws-l~~e  658 (726)
T PRK13341        625 SALLEAEELWLKSQSMPALLQQQLEEAGWS-LGIE  658 (726)
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHCCCC-CEEE
T ss_conf             999999999962688859999999974884-5351