HHsearch alignment for GI: 254780624 and conserved domain: TIGR00438
>TIGR00438 rrmJ ribosomal RNA large subunit methyltransferase J; InterPro: IPR004512 The ribosomal RNA large subunit methyltransferase J 2.1.1 from EC methylates the 23S rRNA. It specifically methylates the uridine in position 2552 of 23s rRNA in the 50S particle using S-adenosyl-L-methionine as a substrate. It was previously known as cell division protein ftsJ.; GO: 0016436 rRNA (uridine) methyltransferase activity, 0006364 rRNA processing.
Probab=98.47 E-value=1.5e-07 Score=68.79 Aligned_cols=97 Identities=20% Similarity=0.295 Sum_probs=72.6
Q ss_pred CCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCC--------CCCCC-
Q ss_conf 799779860233557777766413886327872133222211110000011222222222223334--------57554-
Q gi|254780624|r 69 SKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETL--------PFEAN- 139 (265)
Q Consensus 69 ~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~l--------p~~d~- 139 (265)
T Consensus 31 k~G~~VlDLGAAPGGWsQva~~~~G~kG~ViA~Dl~~-~--------k~FP-~~nv~fi~GDftdee~l~ki~~~~g~de 100 (192)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQP-M--------KGFP-IENVDFIRGDFTDEEVLNKILERVGDDE 100 (192)
T ss_pred ECCCEEEECCCCCCCHHHHHHHHHCCCCEEEEEECCC-C--------CCCC-CCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 0788678657898738778877606853389985455-7--------8856-4661475447678789999998578987
Q ss_pred -CCCCCEEEE-----EECCCHH------HHHHHCCCCHHCCCCCEEEE
Q ss_conf -467403664-----2013213------44320121000485211776
Q gi|254780624|r 140 -SFDACTLAF-----GIRNMPH------ITLVLQEIYRILKCGGRLLV 175 (265)
Q Consensus 140 -sfD~V~~sf-----~l~~~~d------~~~~l~e~~RvLKpGG~~~i 175 (265)
T Consensus 101 kk~DVV~SDaaP~~SG~~~iDh~Rs~dLv~~aL~ia~~vL~~~Gnfvv 148 (192)
T TIGR00438 101 KKVDVVMSDAAPNISGIWDIDHLRSIDLVELALDIAKEVLKPKGNFVV 148 (192)
T ss_pred CEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 437789852688878987543443799999999999998615898999