HHsearch alignment for GI: 254780624 and conserved domain: TIGR00438

>TIGR00438 rrmJ ribosomal RNA large subunit methyltransferase J; InterPro: IPR004512 The ribosomal RNA large subunit methyltransferase J 2.1.1 from EC methylates the 23S rRNA. It specifically methylates the uridine in position 2552 of 23s rRNA in the 50S particle using S-adenosyl-L-methionine as a substrate. It was previously known as cell division protein ftsJ.; GO: 0016436 rRNA (uridine) methyltransferase activity, 0006364 rRNA processing.
Probab=98.47  E-value=1.5e-07  Score=68.79  Aligned_cols=97  Identities=20%  Similarity=0.295  Sum_probs=72.6

Q ss_pred             CCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCC--------CCCCC-
Q ss_conf             799779860233557777766413886327872133222211110000011222222222223334--------57554-
Q gi|254780624|r   69 SKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETL--------PFEAN-  139 (265)
Q Consensus        69 ~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~l--------p~~d~-  139 (265)
T Consensus        31 k~G~~VlDLGAAPGGWsQva~~~~G~kG~ViA~Dl~~-~--------k~FP-~~nv~fi~GDftdee~l~ki~~~~g~de  100 (192)
T TIGR00438        31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQP-M--------KGFP-IENVDFIRGDFTDEEVLNKILERVGDDE  100 (192)
T ss_pred             ECCCEEEECCCCCCCHHHHHHHHHCCCCEEEEEECCC-C--------CCCC-CCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf             0788678657898738778877606853389985455-7--------8856-4661475447678789999998578987


Q ss_pred             -CCCCCEEEE-----EECCCHH------HHHHHCCCCHHCCCCCEEEE
Q ss_conf             -467403664-----2013213------44320121000485211776
Q gi|254780624|r  140 -SFDACTLAF-----GIRNMPH------ITLVLQEIYRILKCGGRLLV  175 (265)
Q Consensus       140 -sfD~V~~sf-----~l~~~~d------~~~~l~e~~RvLKpGG~~~i  175 (265)
T Consensus       101 kk~DVV~SDaaP~~SG~~~iDh~Rs~dLv~~aL~ia~~vL~~~Gnfvv  148 (192)
T TIGR00438       101 KKVDVVMSDAAPNISGIWDIDHLRSIDLVELALDIAKEVLKPKGNFVV  148 (192)
T ss_pred             CEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf             437789852688878987543443799999999999998615898999