HHsearch alignment for GI: 254780624 and conserved domain: TIGR00452
>TIGR00452 TIGR00452 methyltransferase, putative; InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order . Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI ), shared by other AdoMet-Mtases , is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments , although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases , , , . The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences . This is a set of proteobacterial proteins, which have homology in their central region to a large number of methyltransferases active on a variety of substrates. .
Probab=99.12 E-value=7.8e-11 Score=89.98 Aligned_cols=172 Identities=19% Similarity=0.269 Sum_probs=112.8
Q ss_pred CHHHHH-----HHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCC
Q ss_conf 017999-----999852064467997798602335577777664138863278721332222111100000112222222
Q gi|254780624|r 52 LHRFWK-----EAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITF 126 (265)
Q Consensus 52 ~~r~Wr-----~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~ 126 (265)
T Consensus 100 iD~EW~S~~KWDR~l~~~~pL~~--~~i~DVGC~~GY~~~~M~~~Gak--~~VG~DP~~L~~~QFE~~~~ll~~~~~~~l 175 (316)
T TIGR00452 100 IDSEWRSDIKWDRVLPHLSPLKG--RTILDVGCGSGYHLWRMLGEGAK--LLVGIDPTELFLCQFEAVRKLLDNDKRAIL 175 (316)
T ss_pred ECCCCCCCCCHHHHCCCCCCCCC--CEEEEECCCCHHHHHHHHHCCCC--EEEECCHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 50430666535543124665457--77898336870688977620782--787436578999999999987242355754
Q ss_pred CCCCCCCCC-CCCCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCHHHHHHHHH
Q ss_conf 222233345-7554467403664201321344320121000485211776305544551011234565311133210254
Q gi|254780624|r 127 IEANAETLP-FEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYDMWSFKVIPQLGRFI 205 (265)
Q Consensus 127 ~~~da~~lp-~~d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~df~~p~~~~~~~~~~~y~~~iiP~~g~~~ 205 (265)
T Consensus 176 ~~LGiE~l~~~~pnAFD~vFs~GVLYHRkSPLe~L~~L~~~L~~~GELVL~TL-viD~d~-----~---~~LvP~--~~Y 244 (316)
T TIGR00452 176 LPLGIEQLQELKPNAFDTVFSLGVLYHRKSPLEHLKQLKDQLVKKGELVLETL-VIDGDL-----N---TVLVPK--DRY 244 (316)
T ss_pred ECCCHHHHHHCCCCCCEEEEECCHHHCCCCCHHHHHHHHHHHHHCCCEEEEEE-EECCCC-----C---EEECCC--CCC
T ss_conf 03670222320764120312202021155708999999999875793586534-660776-----7---586475--444
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 28876865789999968998999999997599537999855
Q gi|254780624|r 206 AGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVSFTNYT 246 (265)
Q Consensus 206 ~~~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~~~~~~ 246 (265)
T Consensus 245 AkMkNVY--FI------PSv~aL~~Wl~kvGF~~~~i~~V~ 277 (316)
T TIGR00452 245 AKMKNVY--FI------PSVSALKNWLEKVGFENVRILDVL 277 (316)
T ss_pred CCEEEEE--EH------HHHHHHHHHHHHCCCCEEEEEEEE
T ss_conf 2200014--20------238999888874495314787510